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Os10g0442100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoglycerate kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.05 (0.025) R2 : 0.687
β1 : 1.38 (0.0949) R2dD : 0.165 R2D : 0.052
β2 : 1.64 (0.0646) R2dC : 0.446 R2C : 0.408
β3 : 2.43 (0.143) R2dE : 0.228 R2E : 0.0936
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.179 (0.055) R2dN8 : 0.0105 R2N8 : -0.0293
σ : 0.464
deviance : 99.11
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C
peak time of C : 18.7
E
wheather : temperature
threshold : 22.17
memory length : 113
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.16 0.456 9.02 1.52 1.59 1.87 -0.898 -1.8 0.241 18.7 23.21 28 -- --
97 0.459 9.05 1.35 1.64 2.35 -0.938 -- 0.18 18.8 22.33 113 -- --
96.1 0.457 9.02 1.52 1.59 1.93 -- -1.71 0.23 18.7 23 30 -- --
99.11 0.464 9.05 1.38 1.64 2.43 -- -- 0.179 18.7 22.17 113 -- --
226.24 0.704 8.99 1.49 -- 1.87 -- -1.86 0.203 -- 23.1 16 -- --
154.45 0.583 9.11 0.871 1.59 -- -1.14 -- -0.0809 19.4 -- -- -- --
157.96 0.589 9.11 0.899 1.59 -- -- -- -0.0822 19.4 -- -- -- --
231.02 0.711 9.02 1.29 -- 2.17 -- -- 0.156 -- 22.8 2 -- --
143.25 0.56 9.1 -- 1.57 1.74 -- -- -0.0218 18.9 22.37 130 -- --
293.11 0.8 9.08 0.873 -- -- -- -- -0.108 -- -- -- -- --
179.26 0.626 9.14 -- 1.59 -- -- -- -0.182 19.4 -- -- -- --
271.62 0.77 9.06 -- -- 1.75 -- -- -0.0383 -- 22.56 2 -- --
313.2 0.826 9.1 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.42 temperature 25 10 < th dose dependent rect. 18 22
2 97.52 temperature 25 10 < th dose dependent rect. 18 18
6 97.78 temperature 25 10 < th dose dependent rect. 14 22
25 98.37 temperature 20 270 > th dose independent rect. 1 22
28 98.40 temperature 20 90 > th dose independent rect. 3 23
29 98.44 temperature 25 10 < th dose dependent rect. 23 23
34 98.51 temperature 25 10 < th dose dependent rect. 21 23
38 98.57 temperature 25 10 < th dose dependent no NA NA
40 98.67 temperature 25 10 < th dose dependent rect. 9 23
41 98.67 temperature 25 10 < th dose dependent rect. 11 23
44 98.71 temperature 25 10 < th dose dependent rect. 7 23
61 98.94 temperature 20 90 < th dose independent rect. 19 21
63 98.98 temperature 25 30 < th dose dependent rect. 5 23
70 99.06 temperature 25 30 < th dose dependent rect. 1 23
89 99.45 temperature 25 30 < th dose dependent rect. 3 23
97 99.64 temperature 20 270 > th dose independent rect. 10 23
134 100.09 radiation 30 4320 < th dose independent rect. 3 5
139 100.12 radiation 30 4320 < th dose independent rect. 1 7
142 100.17 temperature 25 10 < th dose dependent sin 7 NA
144 100.18 radiation 30 4320 < th dose independent rect. 6 2
145 100.18 temperature 20 90 < th dose independent rect. 21 19
161 100.27 temperature 20 270 < th dose independent rect. 15 22
195 100.60 radiation 30 4320 < th dose independent rect. 16 16
214 100.80 temperature 20 90 > th dose independent no NA NA
218 100.86 temperature 20 90 < th dose independent rect. 21 23
240 101.06 temperature 25 720 < th dose dependent sin 14 NA
243 101.08 temperature 20 90 < th dose independent no NA NA
252 101.19 temperature 20 90 < th dose independent rect. 9 23
296 101.59 wind 9 43200 > th dose dependent rect. 20 9
300 101.60 temperature 25 720 < th dose dependent rect. 9 19
342 101.94 wind 9 43200 > th dose independent rect. 20 8
353 101.99 wind 9 43200 > th dose dependent rect. 20 4
359 102.03 wind 9 43200 > th dose independent rect. 20 5
362 102.04 wind 9 43200 > th dose independent rect. 20 10
369 102.09 temperature 25 720 < th dose dependent rect. 15 14
373 102.13 wind 9 43200 < th dose independent rect. 19 9
374 102.13 temperature 20 270 < th dose independent rect. 3 23
378 102.15 wind 9 43200 < th dose independent rect. 19 5
393 102.24 temperature 25 720 < th dose dependent rect. 17 10
419 102.35 temperature 20 90 < th dose independent rect. 1 23
429 102.40 radiation 10 4320 > th dose dependent rect. 5 2
441 102.43 wind 9 43200 > th dose dependent rect. 17 14
461 102.54 wind 9 43200 < th dose independent rect. 19 12
493 102.68 wind 9 43200 > th dose dependent rect. 17 12
497 102.69 temperature 10 1440 > th dose dependent rect. 7 2
517 102.77 temperature 20 270 > th dose independent rect. 14 23
564 103.02 temperature 30 1440 < th dose dependent rect. 7 2
580 103.08 temperature 10 720 > th dose dependent sin 13 NA
607 103.21 humidity 60 43200 < th dose dependent rect. 6 3
632 103.30 wind 9 43200 > th dose dependent rect. 17 7
638 103.33 wind 9 43200 > th dose independent rect. 17 14
658 103.38 wind 9 43200 < th dose independent rect. 17 15
675 103.46 temperature 10 10 > th dose dependent sin 9 NA
711 103.60 temperature 20 4320 < th dose dependent rect. 5 1
745 103.70 temperature 25 1440 < th dose dependent rect. 4 8
750 103.73 wind 7 43200 > th dose independent rect. 19 14
754 103.74 temperature 25 1440 < th dose dependent rect. 5 6
787 103.84 temperature 10 720 > th dose dependent rect. 17 14
829 103.95 temperature 20 270 < th dose dependent rect. 21 13
928 104.22 wind 5 43200 > th dose dependent sin 11 NA