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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0440500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5 (0.0431) R2 : 0.578
β1 : 4.43 (0.178) R2dD : 0.784 R2D : 0.384
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.26 (0.189) R2dE : 0.188 R2E : -0.19
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.575 (0.0977) R2dN8 : 0.0501 R2N8 : -0.0722
σ : 0.792
deviance : 289
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 5.804
memory length : 4701
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.54 0.787 4.9 4.96 0.795 -2.5 -1.31 5.56 0.818 16.5 20.58 324 -- --
295.71 0.801 5 3.99 0.702 -2.77 -0.415 -- 0.51 14.7 14.17 168 -- --
284.23 0.785 4.93 4.69 0.733 -2.38 -- 4.46 0.725 16.5 20.63 325 -- --
292.75 0.797 5.02 3.98 0.7 -2.83 -- -- 0.534 16.5 12.33 324 -- --
287.9 0.79 4.92 4.78 -- -2.19 -- 2.87 0.719 -- 10.34 2040 -- --
378 0.911 5.09 3.38 0.154 -- -0.314 -- 0.128 9.35 -- -- -- --
378.21 0.911 5.09 3.37 0.168 -- -- -- 0.126 8.19 -- -- -- --
289 0.792 5 4.43 -- -2.26 -- -- 0.575 -- 5.804 4701 -- --
668.55 1.2 5.17 -- 0.226 -1.08 -- -- -0.164 16.3 -14.64 263 -- --
379.77 0.911 5.1 3.37 -- -- -- -- 0.128 -- -- -- -- --
677.41 1.22 5.18 -- 0.197 -- -- -- -0.249 6.93 -- -- -- --
667.93 1.2 5.16 -- -- -0.845 -- -- -0.149 -- -8.929 353 -- --
679.45 1.22 5.18 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.73 wind 9.0 43200 > th dose dependent rect. 19 4
2 270.75 wind 9.0 43200 > th dose independent rect. 19 2
3 271.14 wind 9.0 43200 < th dose independent rect. 19 2
6 272.98 radiation 1.0 14400 < th dose independent rect. 17 4
10 272.98 radiation 1.0 14400 < th dose independent rect. 17 9
12 273.01 radiation 1.0 14400 < th dose independent rect. 17 2
17 274.42 wind 7.0 43200 > th dose dependent rect. 19 2
18 274.52 radiation 1.0 14400 > th dose independent rect. 17 2
28 274.75 radiation 1.0 14400 < th dose dependent rect. 17 6
31 274.78 radiation 1.0 14400 < th dose dependent rect. 17 2
40 275.51 wind 9.0 43200 > th dose independent rect. 19 6
43 275.74 wind 9.0 43200 > th dose dependent rect. 19 6
45 275.99 humidity 80.0 43200 > th dose dependent rect. 18 4
46 276.07 radiation 40.0 4320 < th dose dependent rect. 18 6
52 276.72 humidity 90.0 43200 < th dose independent rect. 20 1
56 276.86 wind 9.0 43200 > th dose dependent rect. 19 11
57 276.88 humidity 90.0 43200 < th dose independent rect. 19 4
58 276.88 wind 9.0 43200 < th dose independent rect. 18 5
63 277.02 humidity 90.0 43200 < th dose independent rect. 22 1
111 278.00 radiation 40.0 4320 < th dose dependent rect. 18 3
119 278.30 temperature 20.0 270 > th dose dependent rect. 7 22
138 278.70 humidity 90.0 43200 > th dose dependent rect. 21 1
156 279.36 wind 9.0 43200 > th dose independent rect. 19 11
162 279.44 radiation 1.0 14400 < th dose dependent sin 15 NA
166 279.45 radiation 1.0 14400 < th dose dependent rect. 7 22
168 279.47 humidity 90.0 43200 > th dose independent rect. 22 1
194 279.78 radiation 1.0 14400 < th dose dependent rect. 7 16
195 279.78 radiation 1.0 14400 < th dose dependent rect. 10 19
205 279.83 radiation 1.0 14400 < th dose dependent rect. 7 12
241 280.21 radiation 1.0 14400 < th dose dependent rect. 10 13
247 280.25 radiation 1.0 14400 < th dose dependent rect. 10 9
262 280.33 radiation 1.0 14400 < th dose independent rect. 7 14
272 280.35 radiation 1.0 14400 < th dose independent rect. 7 19
275 280.36 radiation 1.0 14400 < th dose independent rect. 7 12
284 280.38 radiation 1.0 14400 < th dose dependent rect. 5 1
293 280.41 wind 9.0 43200 < th dose independent rect. 18 12
311 280.49 humidity 90.0 43200 > th dose independent rect. 4 6
327 280.57 radiation 1.0 14400 < th dose dependent rect. 20 10
343 280.76 temperature 20.0 270 > th dose dependent rect. 22 23
356 280.90 radiation 1.0 14400 < th dose independent sin 17 NA
360 280.93 humidity 90.0 43200 > th dose independent rect. 9 1
361 280.93 humidity 90.0 43200 < th dose independent rect. 4 7
373 280.97 radiation 30.0 14400 > th dose independent rect. 16 16
392 281.18 humidity 90.0 43200 < th dose independent rect. 4 21
394 281.21 precipitation 0.1 43200 > th dose dependent rect. 20 2
429 281.37 radiation 1.0 14400 < th dose independent rect. 10 14
431 281.38 radiation 1.0 14400 < th dose independent rect. 10 11
436 281.39 radiation 1.0 14400 < th dose independent rect. 10 16
440 281.41 radiation 1.0 14400 < th dose independent rect. 10 9
452 281.47 radiation 1.0 14400 < th dose independent rect. 13 8
457 281.48 radiation 1.0 14400 < th dose independent rect. 13 13
464 281.50 radiation 1.0 14400 < th dose independent rect. 13 6
482 281.57 radiation 30.0 14400 > th dose independent rect. 7 1
549 281.87 temperature 20.0 270 > th dose dependent no NA NA
579 282.02 precipitation 0.1 43200 > th dose independent rect. 17 2
580 282.02 precipitation 0.1 43200 < th dose independent rect. 17 2
581 282.02 precipitation 0.1 43200 < th dose dependent rect. 17 2
646 282.39 radiation 1.0 14400 < th dose independent rect. 17 21
650 282.41 temperature 10.0 720 > th dose dependent rect. 1 18
660 282.46 radiation 1.0 14400 < th dose dependent rect. 4 19
662 282.48 radiation 1.0 14400 < th dose dependent rect. 4 17
666 282.49 radiation 1.0 14400 < th dose dependent rect. 4 15
706 282.56 radiation 1.0 14400 < th dose dependent rect. 20 23
708 282.57 radiation 1.0 14400 < th dose dependent no NA NA
714 282.58 radiation 1.0 14400 < th dose dependent rect. 22 21
734 282.66 humidity 90.0 43200 < th dose independent rect. 9 1
741 282.72 radiation 30.0 4320 < th dose dependent rect. 18 9
769 282.84 humidity 90.0 43200 > th dose independent rect. 4 21
778 282.87 radiation 1.0 14400 > th dose independent rect. 7 12
857 283.40 humidity 80.0 43200 > th dose dependent rect. 9 2
860 283.43 humidity 80.0 43200 < th dose independent rect. 10 10
863 283.46 radiation 1.0 14400 > th dose independent sin 16 NA
888 283.58 humidity 80.0 43200 > th dose dependent rect. 5 19
908 283.65 humidity 80.0 43200 < th dose independent rect. 12 8
985 284.00 humidity 90.0 43200 > th dose independent sin 3 NA
986 284.00 radiation 1.0 14400 > th dose independent rect. 10 9