Os10g0439200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alpha-expansin OsEXPA25.
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Os10g0439200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alpha-expansin OsEXPA25.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.65 | 0.575 | 3.51 | -0.0568 | 0.625 | -1.8 | 0.422 | 5.48 | 0.104 | 18.9 | 50.71 | 8 | -- | -- |
| 159.42 | 0.588 | 3.5 | -0.0769 | 0.622 | -0.891 | 0.558 | -- | 0.0873 | 19.1 | 52 | 6 | -- | -- |
| 149.48 | 0.569 | 3.51 | -0.0528 | 0.629 | -1.7 | -- | 5.1 | 0.108 | 19 | 50.95 | 6 | -- | -- |
| 160.18 | 0.589 | 3.5 | -0.082 | 0.626 | -0.883 | -- | -- | 0.0919 | 19 | 51.81 | 6 | -- | -- |
| 170.22 | 0.608 | 3.5 | -0.0689 | -- | -1.79 | -- | 5.1 | 0.0986 | -- | 50.71 | 6 | -- | -- |
| 168.97 | 0.609 | 3.51 | -0.0682 | 0.656 | -- | 0.617 | -- | 0.0553 | 18.7 | -- | -- | -- | -- |
| 169.9 | 0.61 | 3.51 | -0.077 | 0.659 | -- | -- | -- | 0.0575 | 18.5 | -- | -- | -- | -- |
| 180.7 | 0.626 | 3.49 | -0.0937 | -- | -0.951 | -- | -- | 0.0837 | -- | 51.45 | 6 | -- | -- |
| 160.35 | 0.59 | 3.5 | -- | 0.626 | -0.883 | -- | -- | 0.101 | 19 | 51.84 | 6 | -- | -- |
| 192.51 | 0.648 | 3.49 | -0.0933 | -- | -- | -- | -- | 0.0439 | -- | -- | -- | -- | -- |
| 170.06 | 0.61 | 3.51 | -- | 0.66 | -- | -- | -- | 0.066 | 18.5 | -- | -- | -- | -- |
| 180.93 | 0.626 | 3.48 | -- | -- | -0.951 | -- | -- | 0.0942 | -- | 51.26 | 6 | -- | -- |
| 192.74 | 0.648 | 3.49 | -- | -- | -- | -- | -- | 0.0542 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.13 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 8 | 140.33 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 14 | 142.64 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 27 | 146.59 | humidity | 50.0 | 270 | > th | dose independent | sin | 8 | NA |
| 28 | 146.71 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 30 | 147.06 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 32 | 148.07 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 64 | 148.10 | atmosphere | 1010.0 | 30 | > th | dose dependent | sin | 0 | NA |
| 65 | 148.11 | atmosphere | 1010.0 | 30 | > th | dose dependent | rect. | 9 | 4 |
| 479 | 149.04 | humidity | 50.0 | 10 | > th | dose independent | sin | 5 | NA |
| 482 | 149.07 | radiation | 10.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 532 | 149.51 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 535 | 149.75 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 539 | 149.95 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 541 | 150.06 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 542 | 150.06 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 576 | 151.07 | humidity | 50.0 | 10 | > th | dose independent | no | NA | NA |
| 578 | 151.25 | humidity | 60.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 579 | 151.30 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 593 | 151.46 | humidity | 60.0 | 90 | > th | dose independent | rect. | 19 | 20 |
| 594 | 151.48 | humidity | 60.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 601 | 151.74 | humidity | 60.0 | 270 | < th | dose independent | rect. | 16 | 20 |
| 655 | 151.91 | humidity | 60.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 684 | 152.24 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 21 |
| 706 | 152.38 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 719 | 152.53 | radiation | 10.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 728 | 152.62 | humidity | 60.0 | 270 | < th | dose independent | sin | 10 | NA |
| 731 | 152.67 | humidity | 60.0 | 270 | > th | dose independent | rect. | 3 | 11 |
| 732 | 152.67 | humidity | 60.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 741 | 153.00 | humidity | 50.0 | 10 | > th | dose independent | rect. | 19 | 23 |
| 745 | 153.03 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 784 | 153.33 | wind | 9.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 785 | 153.35 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 825 | 153.59 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 830 | 153.60 | radiation | 20.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 835 | 153.61 | humidity | 50.0 | 10 | > th | dose independent | rect. | 19 | 21 |
| 836 | 153.61 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 855 | 153.75 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 12 |
| 862 | 153.79 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 867 | 153.92 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 4 | 4 |
| 880 | 153.96 | radiation | 10.0 | 720 | < th | dose independent | rect. | 19 | 12 |
| 882 | 153.97 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 18 | 15 |
| 885 | 153.99 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 893 | 154.08 | humidity | 60.0 | 270 | < th | dose independent | sin | 4 | NA |
| 895 | 154.15 | humidity | 60.0 | 270 | > th | dose independent | rect. | 10 | 13 |
| 909 | 154.31 | wind | 3.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 919 | 154.33 | radiation | 40.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 924 | 154.36 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 927 | 154.37 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 928 | 154.37 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 946 | 154.41 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 948 | 154.41 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 950 | 154.42 | humidity | 70.0 | 270 | < th | dose independent | rect. | 15 | 1 |
| 952 | 154.42 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 968 | 154.43 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 24 | 19 |
| 969 | 154.43 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 977 | 154.46 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 11 | 8 |