Os10g0438700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF343 family protein.
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Os10g0438700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF343 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.73 | 0.328 | 8.97 | -0.31 | 1.46 | -0.579 | 0.786 | -2.58 | -0.0811 | 19.9 | 19.98 | 4122 | -- | -- |
| 54.24 | 0.343 | 8.94 | -0.418 | 1.46 | -0.487 | 0.854 | -- | -0.0836 | 19.9 | 41.14 | 3179 | -- | -- |
| 50.22 | 0.33 | 8.97 | -0.316 | 1.45 | -0.584 | -- | -2.77 | -0.084 | 19.9 | 19.81 | 4035 | -- | -- |
| 56.8 | 0.351 | 8.95 | -0.458 | 1.51 | -0.528 | -- | -- | -0.086 | 20 | 41.33 | 3139 | -- | -- |
| 144.32 | 0.56 | 8.96 | -0.0452 | -- | -1.03 | -- | -2.14 | -0.123 | -- | 29.3 | 2260 | -- | -- |
| 63.18 | 0.373 | 8.93 | -0.469 | 1.5 | -- | 0.983 | -- | -0.0342 | 20.1 | -- | -- | -- | -- |
| 66.08 | 0.381 | 8.93 | -0.497 | 1.5 | -- | -- | -- | -0.0331 | 20.1 | -- | -- | -- | -- |
| 130.53 | 0.532 | 9.05 | -0.819 | -- | -1.34 | -- | -- | -0.438 | -- | 20.1 | 2232 | -- | -- |
| 63.52 | 0.371 | 8.92 | -- | 1.47 | -0.509 | -- | -- | -0.0369 | 20 | 45.04 | 3157 | -- | -- |
| 188.7 | 0.642 | 8.89 | -0.51 | -- | -- | -- | -- | -0.0516 | -- | -- | -- | -- | -- |
| 72.58 | 0.399 | 8.91 | -- | 1.5 | -- | -- | -- | 0.0222 | 20 | -- | -- | -- | -- |
| 91.94 | 0.447 | 8.98 | -- | -- | -1.75 | -- | -- | -0.0118 | -- | 1.569 | 2415 | -- | -- |
| 195.57 | 0.653 | 8.88 | -- | -- | -- | -- | -- | 0.00498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 4 | 46.72 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 7 | 46.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 12 | 47.02 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 12 |
| 14 | 47.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 5 |
| 17 | 47.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 54 | 47.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 66 | 47.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 67 | 47.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 73 | 47.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 75 | 47.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 89 | 47.76 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 14 |
| 92 | 47.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 105 | 47.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 120 | 47.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 121 | 47.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 130 | 47.87 | temperature | 25 | 270 | < th | dose independent | sin | 21 | NA |
| 133 | 47.88 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 135 | 47.88 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 14 |
| 138 | 47.88 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 153 | 47.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 6 |
| 162 | 47.96 | temperature | 25 | 14400 | > th | dose dependent | sin | 5 | NA |
| 165 | 47.96 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 8 |
| 187 | 47.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 12 |
| 205 | 48.00 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 3 |
| 207 | 48.00 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 279 | 48.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 313 | 48.10 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 13 |
| 325 | 48.11 | temperature | 25 | 720 | > th | dose independent | sin | 0 | NA |
| 353 | 48.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 365 | 48.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 428 | 48.16 | temperature | 25 | 270 | > th | dose independent | sin | 21 | NA |
| 478 | 48.19 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 581 | 48.25 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 601 | 48.25 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 738 | 48.36 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 6 |
| 802 | 48.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 837 | 48.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 885 | 48.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 919 | 48.48 | temperature | 30 | 14400 | < th | dose independent | sin | 7 | NA |
| 920 | 48.48 | temperature | 25 | 720 | < th | dose independent | sin | 0 | NA |
| 921 | 48.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 923 | 48.48 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 936 | 48.49 | temperature | 30 | 14400 | > th | dose independent | sin | 7 | NA |
| 950 | 48.50 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 964 | 48.50 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 971 | 48.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 986 | 48.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 3 |