Os10g0436900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/calcium exchanger membrane region domain containing protein.
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Os10g0436900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/calcium exchanger membrane region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.13 | 0.554 | 8.72 | 0.613 | 2.17 | 3.62 | -1.02 | 1.41 | -0.813 | 0.664 | 30.58 | 4339 | -- | -- |
| 140.28 | 0.552 | 8.68 | 0.837 | 2.32 | 3.57 | -1.02 | -- | -0.799 | 0.588 | 36.76 | 3950 | -- | -- |
| 143.13 | 0.557 | 8.71 | 0.643 | 2.26 | 3.61 | -- | 1.33 | -0.829 | 0.748 | 31.22 | 4127 | -- | -- |
| 144.51 | 0.56 | 8.67 | 0.893 | 2.32 | 3.58 | -- | -- | -0.78 | 0.673 | 33.07 | 3981 | -- | -- |
| 246.67 | 0.735 | 8.62 | 0.466 | -- | 5.19 | -- | -1.18 | -0.72 | -- | 36.77 | 6002 | -- | -- |
| 366.83 | 0.898 | 8.84 | -0.752 | 2.03 | -- | -1.15 | -- | -1.49 | 0.49 | -- | -- | -- | -- |
| 372.38 | 0.904 | 8.83 | -0.709 | 2.04 | -- | -- | -- | -1.49 | 0.598 | -- | -- | -- | -- |
| 247.86 | 0.736 | 8.64 | 0.302 | -- | 5.16 | -- | -- | -0.765 | -- | 36.77 | 6002 | -- | -- |
| 160.2 | 0.589 | 8.71 | -- | 2.31 | 3.17 | -- | -- | -0.95 | 0.602 | 76.17 | 3816 | -- | -- |
| 632.86 | 1.18 | 8.79 | -0.637 | -- | -- | -- | -- | -1.45 | -- | -- | -- | -- | -- |
| 385.63 | 0.919 | 8.81 | -- | 2.03 | -- | -- | -- | -1.41 | 0.581 | -- | -- | -- | -- |
| 250.13 | 0.739 | 8.65 | -- | -- | 5.07 | -- | -- | -0.809 | -- | 90.09 | 1686 | -- | -- |
| 643.57 | 1.18 | 8.78 | -- | -- | -- | -- | -- | -1.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.46 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 10 |
| 4 | 130.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 10 |
| 14 | 130.79 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 8 |
| 21 | 130.86 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 8 |
| 63 | 131.74 | temperature | 10 | 4320 | > th | dose dependent | sin | 8 | NA |
| 74 | 131.87 | temperature | 30 | 4320 | < th | dose dependent | sin | 9 | NA |
| 99 | 132.26 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 102 | 132.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 277 | 134.09 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 308 | 134.45 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 346 | 134.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 386 | 135.00 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 448 | 135.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 568 | 136.25 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 632 | 136.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 634 | 136.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 676 | 137.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 783 | 137.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 901 | 138.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 907 | 138.81 | radiation | 1 | 43200 | < th | dose dependent | sin | 15 | NA |
| 955 | 139.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 962 | 139.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 973 | 139.17 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |