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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0436500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Putative gypsy type transposon domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0163) R2 : 0.000225
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.011 (0.0343) R2dN8 : 0.00029 R2N8 : 0.000225
σ : 0.307
deviance : 43.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.79 0.296 2.84 0.021 0.0526 0.426 -0.192 -2.06 0.0319 7.64 0.4118 3201 -- --
42.5 0.304 2.82 -0.0328 0.0635 0.255 -0.155 -- 0.0275 7.08 0.3901 3430 -- --
39.83 0.294 2.85 -0.000865 0.0507 0.461 -- -2.07 0.0324 7.45 0.4274 2998 -- --
42.6 0.304 2.82 -0.0337 0.0514 0.195 -- -- 0.0222 7.14 0.3869 3468 -- --
39.96 0.294 2.85 2.89e-05 -- 0.466 -- -2.08 0.0332 -- 0.4337 2996 -- --
42.76 0.307 2.82 0.0137 0.0593 -- -0.234 -- 0.0112 8.66 -- -- -- --
42.94 0.307 2.82 0.00623 0.0596 -- -- -- 0.0112 8.86 -- -- -- --
42.75 0.305 2.82 -0.0288 -- 0.2 -- -- 0.0256 -- 0.418 3430 -- --
42.58 0.304 2.82 -- 0.0578 0.183 -- -- 0.0285 8.82 0.3721 3371 -- --
43.14 0.307 2.82 0.00625 -- -- -- -- 0.0117 -- -- -- -- --
42.94 0.307 2.82 -- 0.0597 -- -- -- 0.0105 8.85 -- -- -- --
42.77 0.305 2.82 -- -- 0.187 -- -- 0.0275 -- 0.4189 3420 -- --
43.15 0.307 2.82 -- -- -- -- -- 0.011 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.61 temperature 20.0 270 < th dose independent rect. 9 1
2 40.10 temperature 20.0 270 < th dose dependent rect. 8 2
10 40.18 precipitation 0.1 4320 < th dose independent rect. 4 8
11 40.18 precipitation 0.1 4320 < th dose dependent rect. 4 8
12 40.21 precipitation 0.1 4320 < th dose independent rect. 6 3
16 40.21 precipitation 0.1 4320 < th dose dependent rect. 6 3
22 40.23 precipitation 0.1 4320 > th dose independent rect. 4 8
31 40.24 precipitation 0.1 4320 > th dose dependent rect. 4 8
32 40.25 precipitation 0.1 4320 > th dose independent rect. 6 4
35 40.25 precipitation 0.1 4320 > th dose dependent rect. 6 4
38 40.26 atmosphere 1015.0 1440 > th dose independent rect. 14 12
42 40.27 atmosphere 1015.0 1440 > th dose independent rect. 14 10
89 40.28 atmosphere 1015.0 1440 > th dose dependent rect. 14 8
96 40.29 atmosphere 1015.0 30 < th dose independent rect. 3 23
97 40.29 atmosphere 1015.0 1440 > th dose dependent rect. 16 6
104 40.30 precipitation 0.1 4320 > th dose independent rect. 9 1
116 40.30 precipitation 0.1 4320 < th dose independent rect. 4 18
118 40.30 precipitation 0.1 4320 > th dose dependent rect. 9 1
120 40.30 precipitation 0.1 4320 < th dose dependent rect. 4 18
123 40.31 precipitation 0.1 4320 < th dose independent rect. 9 1
135 40.31 precipitation 0.1 4320 > th dose independent rect. 4 18
138 40.31 precipitation 0.1 4320 < th dose dependent rect. 9 1
144 40.32 atmosphere 1015.0 1440 > th dose independent sin 12 NA
147 40.32 atmosphere 1015.0 1440 < th dose independent rect. 15 10
150 40.32 atmosphere 1015.0 1440 < th dose independent rect. 15 18
154 40.32 precipitation 0.1 4320 > th dose dependent rect. 4 14
155 40.32 precipitation 0.1 4320 > th dose dependent rect. 4 19
162 40.33 atmosphere 1015.0 1440 > th dose independent rect. 21 7
179 40.33 atmosphere 1015.0 1440 < th dose independent rect. 15 15
200 40.34 atmosphere 1015.0 1440 < th dose independent rect. 21 12
210 40.34 atmosphere 1015.0 1440 > th dose dependent rect. 21 1
218 40.35 atmosphere 1015.0 1440 < th dose independent rect. 21 6
223 40.35 atmosphere 1015.0 1440 < th dose independent rect. 21 9
272 40.37 atmosphere 1015.0 1440 < th dose independent sin 11 NA
282 40.37 precipitation 0.1 4320 < th dose independent rect. 4 14
295 40.37 precipitation 0.1 4320 < th dose dependent rect. 4 14
317 40.38 precipitation 0.1 4320 > th dose independent rect. 4 14
349 40.39 precipitation 0.1 4320 > th dose dependent sin 0 NA
361 40.39 precipitation 0.1 4320 > th dose dependent rect. 21 21
393 40.41 precipitation 0.1 4320 > th dose independent sin 0 NA
395 40.41 precipitation 0.1 4320 < th dose independent sin 0 NA
419 40.41 precipitation 0.1 4320 < th dose dependent sin 0 NA
421 40.41 humidity 50.0 4320 < th dose dependent rect. 12 2
480 40.42 precipitation 0.1 4320 > th dose dependent rect. 15 22
500 40.43 precipitation 0.1 4320 > th dose independent rect. 15 22
502 40.43 precipitation 0.1 4320 < th dose independent rect. 15 22
521 40.43 precipitation 0.1 4320 < th dose dependent rect. 15 22
554 40.44 precipitation 0.1 4320 > th dose dependent rect. 17 20
562 40.45 precipitation 0.1 4320 > th dose independent rect. 9 13
574 40.45 precipitation 0.1 4320 > th dose independent rect. 21 22
575 40.45 precipitation 0.1 4320 < th dose independent rect. 21 22
598 40.45 precipitation 0.1 4320 < th dose dependent rect. 21 22
670 40.47 precipitation 0.1 4320 > th dose dependent rect. 21 16
690 40.48 precipitation 0.1 4320 > th dose independent rect. 21 16
691 40.48 precipitation 0.1 4320 < th dose independent rect. 21 16
703 40.48 precipitation 0.1 4320 < th dose dependent rect. 21 16
740 40.50 precipitation 0.1 4320 > th dose independent no NA NA
742 40.50 precipitation 0.1 4320 < th dose independent no NA NA
766 40.50 precipitation 0.1 4320 > th dose dependent no NA NA
768 40.50 precipitation 0.1 4320 < th dose dependent no NA NA
786 40.50 precipitation 0.1 4320 > th dose dependent rect. 17 23
829 40.51 precipitation 0.1 4320 > th dose dependent rect. 8 23
834 40.52 atmosphere 1015.0 1440 < th dose independent rect. 22 1
864 40.52 precipitation 0.1 4320 > th dose independent rect. 8 23
930 40.53 precipitation 0.1 4320 < th dose independent rect. 8 23
939 40.53 precipitation 0.1 4320 > th dose dependent rect. 14 9
979 40.53 precipitation 0.1 4320 > th dose dependent rect. 11 23
982 40.53 precipitation 0.1 4320 < th dose dependent rect. 8 23
987 40.54 precipitation 0.1 4320 > th dose independent rect. 12 1
989 40.54 precipitation 0.1 4320 < th dose independent rect. 14 8