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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0434800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.29 (0.0473) R2 : 0.288
β1 : 0.837 (0.173) R2dD : 0.0358 R2D : 0.0436
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.58 (0.129) R2dE : 0.242 R2E : 0.253
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0261 (0.102) R2dN8 : -0.000127 R2N8 : 0.000944
σ : 0.88
deviance : 357.37
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.98
memory length : 436
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.53
open length of G : 1.64

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.99 0.878 4.31 0.695 0.471 1.83 1.2 -0.982 -0.0565 11.2 20.24 345 2.95 2.98
348.08 0.869 4.3 0.759 0.463 1.67 1.26 -- -0.0287 11.5 18.87 357 2.96 2.75
353.06 0.875 4.29 0.82 0.497 1.69 -- -0.0684 0.00852 10.8 20.07 353 3.13 2.38
351.56 0.873 4.29 0.837 0.422 1.65 -- -- 0.0107 12.3 17.05 365 3.12 2.15
358.55 0.882 4.28 0.865 -- 1.64 -- 0.312 0.072 -- 15.97 431 3.17 2.35
401.45 0.939 4.22 0.937 1.14 -- 0.896 -- 0.221 8.19 -- -- -- --
403.76 0.941 4.22 0.961 1.14 -- -- -- 0.219 8.03 -- -- -- --
357.37 0.88 4.29 0.837 -- 1.58 -- -- 0.0261 -- 15.98 436 3.53 1.64
369.64 0.895 4.32 -- 0.425 1.71 -- -- -0.0985 12.5 17.46 372 3.15 2.02
475.41 1.02 4.25 0.972 -- -- -- -- 0.234 -- -- -- -- --
428.11 0.968 4.24 -- 1.15 -- -- -- 0.112 7.97 -- -- -- --
373.68 0.9 4.33 -- -- 1.67 -- -- -0.093 -- 16.4 441 3.45 1.72
500.32 1.04 4.27 -- -- -- -- -- 0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 350.59 temperature 20.0 270 > th dose dependent rect. 3 3
2 352.32 temperature 20.0 10 > th dose dependent rect. 4 3
6 353.19 wind 3.0 30 < th dose dependent rect. 4 3
7 353.31 temperature 20.0 30 > th dose independent rect. 4 3
12 354.65 wind 5.0 30 < th dose dependent rect. 4 7
15 354.98 wind 3.0 30 < th dose dependent rect. 4 5
18 355.04 wind 9.0 30 < th dose dependent rect. 4 15
20 355.15 radiation 10.0 30 < th dose independent rect. 4 21
23 355.43 temperature 20.0 270 > th dose independent rect. 3 3
33 356.51 temperature 20.0 270 > th dose independent rect. 2 5
38 356.77 radiation 10.0 10 < th dose independent rect. 4 6
48 357.11 temperature 15.0 90 > th dose independent rect. 19 9
53 357.23 radiation 40.0 10 < th dose dependent rect. 4 7
57 357.35 humidity 50.0 30 > th dose dependent rect. 4 7
60 357.54 radiation 1.0 90 < th dose dependent rect. 5 23
65 357.88 wind 5.0 30 < th dose independent rect. 4 16
109 359.61 temperature 20.0 90 > th dose independent rect. 4 15
111 359.66 temperature 10.0 30 > th dose dependent rect. 4 16
125 360.11 temperature 15.0 10 > th dose independent rect. 10 18
131 360.15 precipitation 0.1 30 < th dose independent rect. 4 16
133 360.15 precipitation 0.1 30 < th dose dependent rect. 4 16
141 360.36 wind 3.0 10 < th dose independent rect. 4 6
161 360.87 radiation 20.0 10 < th dose independent rect. 4 16
170 361.04 radiation 40.0 10 < th dose independent rect. 4 7
171 361.05 temperature 15.0 30 > th dose independent rect. 7 21
206 361.69 humidity 60.0 10 > th dose independent rect. 4 7
213 361.88 wind 1.0 90 < th dose independent rect. 4 2
225 362.13 wind 9.0 90 < th dose independent rect. 19 9
227 362.14 temperature 30.0 90 < th dose independent rect. 19 9
228 362.14 humidity 50.0 90 > th dose independent rect. 19 9
230 362.14 atmosphere 995.0 90 > th dose independent rect. 19 9
231 362.14 radiation 1.0 90 < th dose independent rect. 19 9
236 362.14 temperature 10.0 90 > th dose independent rect. 4 15
237 362.14 atmosphere 1015.0 90 < th dose independent rect. 4 15
238 362.14 radiation 1.0 90 < th dose dependent rect. 19 9
284 362.52 wind 5.0 30 < th dose independent rect. 20 8
322 362.91 wind 9.0 10 < th dose dependent rect. 20 8
329 363.06 humidity 70.0 30 > th dose dependent rect. 4 3
334 363.16 precipitation 0.1 30 < th dose independent rect. 20 8
336 363.16 precipitation 0.1 30 < th dose dependent rect. 20 8
375 363.81 radiation 30.0 10 < th dose dependent rect. 4 21
402 364.18 atmosphere 995.0 10 > th dose independent rect. 10 18
403 364.19 wind 9.0 10 < th dose independent rect. 11 17
456 364.57 humidity 80.0 30 > th dose independent rect. 4 3
464 364.65 precipitation 0.1 10 < th dose independent rect. 4 6
465 364.65 precipitation 0.1 10 < th dose dependent rect. 4 6
480 364.89 temperature 10.0 10 > th dose independent rect. 4 6
483 364.89 atmosphere 995.0 10 > th dose independent rect. 4 6
484 364.89 atmosphere 1015.0 10 < th dose independent rect. 4 6
519 365.18 humidity 50.0 30 > th dose dependent rect. 19 9
523 365.22 wind 3.0 270 < th dose independent rect. 2 5
570 365.80 temperature 30.0 10 < th dose independent rect. 4 6
573 365.84 temperature 10.0 30 > th dose dependent rect. 20 8
585 365.88 radiation 40.0 10 < th dose dependent rect. 4 16
588 365.92 atmosphere 995.0 30 > th dose independent rect. 7 21
700 366.70 temperature 30.0 30 < th dose independent rect. 16 12
704 366.74 wind 1.0 90 < th dose dependent rect. 4 19
708 366.76 precipitation 0.1 30 < th dose independent rect. 4 3
712 366.76 precipitation 0.1 30 < th dose dependent rect. 4 3
716 366.79 temperature 15.0 270 > th dose independent rect. 7 19
720 366.82 temperature 10.0 30 > th dose independent rect. 4 3
722 366.82 temperature 30.0 30 < th dose independent rect. 4 3
723 366.82 humidity 50.0 30 > th dose independent rect. 4 3
726 366.82 atmosphere 995.0 30 > th dose independent rect. 4 3
727 366.82 atmosphere 1015.0 30 < th dose independent rect. 4 3
731 366.82 temperature 30.0 720 < th dose independent rect. 18 9
762 366.92 precipitation 0.1 10 < th dose independent rect. 10 18
763 366.92 precipitation 0.1 10 < th dose dependent rect. 10 18
778 367.03 radiation 40.0 10 < th dose independent rect. 4 16
800 367.12 radiation 1.0 90 < th dose dependent rect. 10 18
825 367.27 wind 9.0 30 < th dose independent rect. 7 21
834 367.33 radiation 40.0 30 < th dose dependent rect. 4 3
841 367.40 atmosphere 995.0 30 > th dose dependent rect. 4 5
844 367.46 temperature 15.0 270 > th dose independent rect. 6 21
862 367.59 atmosphere 1015.0 30 < th dose dependent rect. 4 3
904 367.79 wind 7.0 270 < th dose dependent rect. 1 8
916 367.86 humidity 50.0 720 > th dose independent rect. 16 1
941 367.99 atmosphere 995.0 30 > th dose independent rect. 4 16
942 368.00 humidity 50.0 10 > th dose independent rect. 11 17
946 368.04 wind 9.0 270 < th dose dependent rect. 14 17