Os10g0434300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os10g0434300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 175.88 | 0.623 | 6.08 | -0.395 | 1.05 | -3.68 | -0.875 | -6.28 | 0.0564 | 23.5 | 20.69 | 5118 | -- | -- |
| 198.08 | 0.656 | 6.23 | -0.566 | 0.942 | -1.47 | -0.0484 | -- | 0.0166 | 23.8 | 19.85 | 6542 | -- | -- |
| 178.5 | 0.622 | 6.05 | -0.364 | 1.04 | -4.22 | -- | -7.31 | 0.0737 | 23.6 | 20.01 | 5131 | -- | -- |
| 185.26 | 0.634 | 6.25 | -0.285 | 0.981 | -1.28 | -- | -- | 0.00435 | 23.7 | 25.1 | 2276 | -- | -- |
| 248.15 | 0.734 | 6.04 | -0.39 | -- | -4.18 | -- | -7.13 | 0.0688 | -- | 20.28 | 5181 | -- | -- |
| 211.6 | 0.682 | 6.18 | 0.178 | 1.1 | -- | -0.817 | -- | 0.296 | 23.5 | -- | -- | -- | -- |
| 214.46 | 0.686 | 6.18 | 0.211 | 1.1 | -- | -- | -- | 0.299 | 23.6 | -- | -- | -- | -- |
| 242.77 | 0.726 | 6.25 | -0.401 | -- | -1.57 | -- | -- | -0.117 | -- | 26.62 | 2347 | -- | -- |
| 187.07 | 0.637 | 6.24 | -- | 1 | -1.16 | -- | -- | 0.0294 | 23.6 | 25.1 | 2232 | -- | -- |
| 290.51 | 0.796 | 6.15 | 0.241 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 215.63 | 0.687 | 6.18 | -- | 1.1 | -- | -- | -- | 0.275 | 23.6 | -- | -- | -- | -- |
| 234.34 | 0.713 | 6.21 | -- | -- | -1.79 | -- | -- | 0.053 | -- | 54.97 | 888 | -- | -- |
| 292.04 | 0.798 | 6.16 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.98 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 2 | 167.99 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 3 | 168.37 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 11 | 169.07 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 30 | 169.92 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 33 | 169.93 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 43 | 170.60 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 50 | 170.74 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 60 | 171.04 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 65 | 171.21 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 77 | 171.50 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 81 | 171.68 | wind | 1.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 93 | 171.96 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 96 | 172.04 | wind | 3.0 | 14400 | < th | dose dependent | sin | 3 | NA |
| 98 | 172.09 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 104 | 172.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 108 | 172.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 113 | 172.35 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 116 | 172.39 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 19 |
| 123 | 172.48 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 124 | 172.48 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 15 |
| 139 | 172.66 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 173 | 173.03 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 204 | 173.28 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 14 |
| 220 | 173.42 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 222 | 173.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 224 | 173.45 | wind | 1.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 249 | 173.59 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 250 | 173.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 253 | 173.62 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 257 | 173.63 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 260 | 173.66 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 261 | 173.66 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 265 | 173.69 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 17 |
| 283 | 173.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 290 | 173.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 305 | 173.92 | wind | 1.0 | 14400 | < th | dose independent | sin | 1 | NA |
| 313 | 174.00 | wind | 3.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 327 | 174.09 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 328 | 174.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 336 | 174.11 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 338 | 174.11 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 341 | 174.14 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 365 | 174.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 368 | 174.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 379 | 174.27 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 403 | 174.35 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 414 | 174.39 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 432 | 174.45 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 454 | 174.52 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 484 | 174.64 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 487 | 174.65 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 488 | 174.65 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 496 | 174.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 499 | 174.69 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 507 | 174.71 | wind | 3.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 517 | 174.73 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 538 | 174.76 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 539 | 174.76 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 544 | 174.77 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 548 | 174.78 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 556 | 174.79 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 596 | 174.85 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 599 | 174.86 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 694 | 175.04 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 714 | 175.10 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 719 | 175.11 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 721 | 175.12 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 911 | 175.39 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 926 | 175.41 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 971 | 175.46 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |
| 974 | 175.47 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 980 | 175.47 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 1 | 5 |