Os10g0432400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os10g0432400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.27 | 0.595 | 3.4 | 0.723 | 0.272 | 1.79 | -0.855 | 4.88 | -0.0836 | 22 | 24.43 | 683 | -- | -- |
| 170.47 | 0.608 | 3.55 | 0.094 | 0.166 | 2.12 | -0.704 | -- | -0.329 | 23.9 | 24.15 | 690 | -- | -- |
| 162.67 | 0.594 | 3.41 | 0.659 | 0.272 | 1.81 | -- | 4.26 | -0.108 | 21.5 | 23.89 | 668 | -- | -- |
| 166.79 | 0.601 | 3.51 | -0.101 | 0.229 | 2.24 | -- | -- | -0.37 | 23.4 | 23.66 | 656 | -- | -- |
| 165.84 | 0.6 | 3.43 | 0.517 | -- | 2.06 | -- | 3.34 | -0.184 | -- | 23.89 | 667 | -- | -- |
| 265.91 | 0.764 | 3.47 | 0.419 | 1.03 | -- | 0.566 | -- | -0.0809 | 20.2 | -- | -- | -- | -- |
| 266.87 | 0.765 | 3.47 | 0.402 | 1.03 | -- | -- | -- | -0.081 | 20.3 | -- | -- | -- | -- |
| 169.33 | 0.606 | 3.51 | -0.131 | -- | 2.35 | -- | -- | -0.37 | -- | 23.8 | 690 | -- | -- |
| 167.04 | 0.602 | 3.51 | -- | 0.244 | 2.22 | -- | -- | -0.354 | 23.5 | 23.68 | 647 | -- | -- |
| 325.54 | 0.843 | 3.44 | 0.395 | -- | -- | -- | -- | -0.0926 | -- | -- | -- | -- | -- |
| 271.13 | 0.77 | 3.48 | -- | 1.03 | -- | -- | -- | -0.126 | 20.3 | -- | -- | -- | -- |
| 169.75 | 0.607 | 3.5 | -- | -- | 2.32 | -- | -- | -0.35 | -- | 23.83 | 687 | -- | -- |
| 329.65 | 0.847 | 3.45 | -- | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.55 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 21 |
| 4 | 160.23 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 10 | 160.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 15 | 161.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 21 | 161.26 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 21 |
| 51 | 161.61 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 54 | 161.63 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 89 | 162.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 104 | 162.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 131 | 163.40 | temperature | 25 | 720 | > th | dose dependent | sin | 22 | NA |
| 185 | 164.81 | temperature | 30 | 720 | < th | dose independent | sin | 9 | NA |
| 213 | 165.87 | temperature | 30 | 720 | > th | dose independent | sin | 9 | NA |
| 217 | 165.99 | temperature | 10 | 720 | > th | dose dependent | sin | 22 | NA |
| 243 | 166.49 | temperature | 30 | 720 | > th | dose independent | sin | 2 | NA |
| 283 | 167.26 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 297 | 167.53 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 3 |
| 306 | 167.73 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 318 | 167.98 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 6 |
| 340 | 168.12 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 14 |
| 341 | 168.13 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 23 |
| 361 | 168.20 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 362 | 168.20 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 11 |
| 454 | 168.22 | temperature | 30 | 720 | > th | dose dependent | sin | 9 | NA |
| 470 | 168.25 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 20 |
| 534 | 168.80 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 542 | 168.90 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 22 |
| 546 | 168.93 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 20 |
| 549 | 169.03 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 18 |
| 559 | 169.08 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 17 |
| 566 | 169.16 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 586 | 169.49 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 766 | 170.02 | temperature | 30 | 720 | < th | dose independent | sin | 1 | NA |
| 767 | 170.02 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 798 | 170.17 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 18 |
| 862 | 170.83 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 15 |
| 985 | 171.74 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 10 |