Os10g0431900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os10g0431900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.28 | 0.313 | 13.7 | 0.0417 | 1.51 | 1.46 | 0.22 | 1.14 | 0.273 | 22.5 | 19.3 | 6568 | -- | -- |
| 43.68 | 0.308 | 13.8 | 0.253 | 1.46 | 0.922 | 0.308 | -- | 0.237 | 22.4 | 21.8 | 3618 | -- | -- |
| 43.96 | 0.309 | 13.7 | -0.0498 | 1.51 | 1.59 | -- | 1.26 | 0.265 | 22.5 | 19.1 | 7875 | -- | -- |
| 43.27 | 0.306 | 13.8 | 0.249 | 1.51 | 0.858 | -- | -- | 0.253 | 22.5 | 21.7 | 3371 | -- | -- |
| 184.02 | 0.632 | 13.7 | -0.214 | -- | 1.89 | -- | 1.68 | 0.218 | -- | 19 | 7961 | -- | -- |
| 64 | 0.375 | 13.7 | 0.735 | 1.54 | -- | 0.23 | -- | 0.555 | 22.6 | -- | -- | -- | -- |
| 64.22 | 0.375 | 13.7 | 0.726 | 1.54 | -- | -- | -- | 0.555 | 22.6 | -- | -- | -- | -- |
| 140.67 | 0.552 | 13.7 | 0.374 | -- | 1.22 | -- | -- | 0.285 | -- | 25.2 | 820 | -- | -- |
| 44.54 | 0.311 | 13.8 | -- | 1.51 | 0.935 | -- | -- | 0.193 | 22.5 | 21.6 | 3388 | -- | -- |
| 210.1 | 0.677 | 13.7 | 0.754 | -- | -- | -- | -- | 0.562 | -- | -- | -- | -- | -- |
| 78.11 | 0.413 | 13.7 | -- | 1.55 | -- | -- | -- | 0.474 | 22.6 | -- | -- | -- | -- |
| 141.35 | 0.554 | 13.8 | -- | -- | 1.36 | -- | -- | 0.0385 | -- | 25.1 | 821 | -- | -- |
| 225.09 | 0.7 | 13.7 | -- | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.78 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 42.78 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 16 | 43.03 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 47 | 43.33 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 143 | 43.95 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 164 | 44.03 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 217 | 44.22 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 221 | 44.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 230 | 44.25 | wind | 9.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 256 | 44.33 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 262 | 44.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 263 | 44.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 279 | 44.37 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 302 | 44.43 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 319 | 44.45 | temperature | 15.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 325 | 44.46 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 344 | 44.49 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 345 | 44.49 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 354 | 44.51 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 361 | 44.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 362 | 44.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 373 | 44.54 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 379 | 44.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 388 | 44.57 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 391 | 44.58 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 392 | 44.58 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 400 | 44.59 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 412 | 44.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 413 | 44.62 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 421 | 44.64 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 423 | 44.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 426 | 44.65 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 431 | 44.66 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 434 | 44.66 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 438 | 44.67 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 468 | 44.71 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 477 | 44.72 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 479 | 44.72 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 480 | 44.72 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 489 | 44.73 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 505 | 44.74 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 508 | 44.75 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 528 | 44.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 531 | 44.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 566 | 44.82 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 567 | 44.82 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 573 | 44.83 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 582 | 44.84 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 600 | 44.85 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 614 | 44.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 621 | 44.87 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 630 | 44.88 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 637 | 44.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 658 | 44.90 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 665 | 44.90 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 666 | 44.91 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 698 | 44.94 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 717 | 44.95 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 731 | 44.96 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 755 | 44.98 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 785 | 45.00 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 788 | 45.00 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 791 | 45.00 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 892 | 45.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 12 |
| 903 | 45.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 942 | 45.07 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 943 | 45.07 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 944 | 45.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 991 | 45.09 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |