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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0429300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0352) R2 : 0.0094
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.154 (0.0742) R2dN8 : 0.0121 R2N8 : 0.0094
σ : 0.663
deviance : 201.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.95 0.646 2.99 -0.629 0.179 1.11 -0.421 -10.4 0.166 7.97 30.7 34 -- --
199.05 0.662 2.92 0.0432 0.197 0.0809 -0.455 -- 0.162 8.17 30.7 34 -- --
189.3 0.641 2.99 -0.643 0.195 1.14 -- -10.5 0.168 6.91 30.7 30 -- --
199.35 0.662 2.92 0.0224 0.218 0.13 -- -- 0.164 6.97 30.44 31 -- --
191.21 0.644 3 -0.642 -- 1.11 -- -10.6 0.169 -- 30.7 30 -- --
199.21 0.662 2.93 0.052 0.188 -- -0.484 -- 0.156 8.42 -- -- -- --
199.77 0.662 2.93 0.0347 0.202 -- -- -- 0.155 7.36 -- -- -- --
201.6 0.664 2.93 0.0285 -- 0.112 -- -- 0.167 -- 30.6 2 -- --
199.32 0.661 2.92 -- 0.218 0.14 -- -- 0.162 6.94 30.51 29 -- --
201.94 0.664 2.93 0.0381 -- -- -- -- 0.158 -- -- -- -- --
199.8 0.661 2.93 -- 0.202 -- -- -- 0.151 7.34 -- -- -- --
201.62 0.663 2.93 -- -- 0.114 -- -- 0.164 -- 30.6 2 -- --
201.98 0.663 2.93 -- -- -- -- -- 0.154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.61 wind 1 10 < th dose dependent rect. 9 15
6 187.17 wind 1 10 < th dose independent rect. 23 1
10 187.17 wind 1 10 < th dose dependent rect. 23 1
17 187.90 wind 1 90 < th dose independent rect. 22 1
18 188.06 temperature 30 10 > th dose independent rect. 11 1
21 188.18 temperature 30 90 > th dose independent rect. 11 1
25 188.56 wind 1 10 < th dose dependent rect. 17 7
47 188.89 wind 1 10 < th dose dependent rect. 12 13
51 189.03 temperature 30 10 > th dose dependent rect. 11 1
89 189.20 wind 1 10 < th dose independent rect. 17 8
92 189.24 humidity 60 10 < th dose independent sin 11 NA
98 189.31 wind 1 10 < th dose independent rect. 12 13
99 189.32 humidity 60 10 < th dose dependent rect. 14 21
126 189.49 humidity 60 10 < th dose independent rect. 14 21
141 189.63 temperature 30 30 > th dose independent rect. 16 20
207 190.09 temperature 30 10 > th dose dependent rect. 16 20
208 190.10 humidity 60 10 > th dose independent sin 11 NA
212 190.11 temperature 20 90 < th dose independent rect. 23 1
221 190.14 wind 1 10 < th dose dependent sin 15 NA
321 190.59 humidity 60 10 < th dose dependent sin 11 NA
338 190.78 wind 1 90 < th dose independent rect. 17 7
366 190.91 temperature 30 10 > th dose dependent sin 7 NA
410 191.23 wind 1 10 < th dose independent rect. 6 19
427 191.35 wind 1 90 < th dose independent rect. 22 6
522 191.74 wind 1 10 < th dose independent rect. 6 7
557 191.88 temperature 30 30 > th dose independent sin 7 NA
588 191.96 wind 1 10 < th dose independent rect. 6 4
607 191.98 wind 1 10 < th dose independent rect. 6 10
637 192.07 humidity 60 1440 > th dose independent rect. 24 9
659 192.19 humidity 60 10 < th dose independent rect. 12 23
680 192.27 temperature 30 10 > th dose dependent rect. 14 22
681 192.28 temperature 25 90 < th dose dependent rect. 22 1
691 192.31 wind 1 10 < th dose independent sin 15 NA
714 192.33 temperature 25 10 < th dose dependent rect. 23 1
716 192.33 radiation 20 30 > th dose dependent rect. 15 19
804 192.44 humidity 60 4320 < th dose dependent rect. 8 1
851 192.53 humidity 60 1440 > th dose independent rect. 6 3
860 192.56 humidity 60 4320 < th dose independent rect. 8 1
876 192.58 wind 1 10 < th dose dependent rect. 8 4
911 192.66 humidity 60 1440 > th dose independent rect. 8 1
921 192.69 wind 1 10 > th dose independent sin 16 NA
964 192.73 humidity 60 1440 > th dose independent rect. 4 5
997 192.74 humidity 60 1440 > th dose independent rect. 22 11