Os10g0428900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os10g0428900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.12 | 0.837 | 3.53 | -2.28 | 0.0154 | -6.29 | -0.265 | 31 | -0.275 | 23.3 | 1000 | 240 | -- | -- |
| 331.4 | 0.854 | 3.19 | -0.342 | 0.0678 | -0.702 | -0.121 | -- | -0.279 | 1.15 | 1000 | 240 | -- | -- |
| 315.59 | 0.834 | 3.52 | -2.23 | 0.0557 | -5.6 | -- | 27.2 | -0.268 | 4.14 | 1000 | 243 | -- | -- |
| 326.51 | 0.847 | 3.19 | -0.361 | 0.0735 | -0.81 | -- | -- | -0.27 | 2.3 | 1000 | 243 | -- | -- |
| 315.76 | 0.832 | 3.52 | -2.24 | -- | -5.61 | -- | 27.3 | -0.267 | -- | 1000 | 243 | -- | -- |
| 344.89 | 0.871 | 3.2 | -0.219 | 0.0473 | -- | -0.182 | -- | -0.326 | 0.344 | -- | -- | -- | -- |
| 345.02 | 0.87 | 3.2 | -0.212 | 0.052 | -- | -- | -- | -0.326 | 1.81 | -- | -- | -- | -- |
| 326.83 | 0.846 | 3.19 | -0.357 | -- | -0.806 | -- | -- | -0.269 | -- | 1000 | 243 | -- | -- |
| 329.85 | 0.85 | 3.18 | -- | 0.0652 | -0.75 | -- | -- | -0.235 | 2.17 | 1000 | 243 | -- | -- |
| 345.18 | 0.868 | 3.2 | -0.21 | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
| 346.2 | 0.87 | 3.2 | -- | 0.0482 | -- | -- | -- | -0.302 | 1.69 | -- | -- | -- | -- |
| 330.1 | 0.849 | 3.18 | -- | -- | -0.747 | -- | -- | -0.234 | -- | 1000 | 243 | -- | -- |
| 346.34 | 0.869 | 3.19 | -- | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 313.91 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 23 | 17 |
| 7 | 314.28 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 21 | 20 |
| 21 | 315.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 26 | 316.09 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 5 | 21 |
| 34 | 316.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 39 | 316.68 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 23 |
| 55 | 317.23 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 57 | 317.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 64 | 317.49 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 66 | 317.50 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 74 | 317.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 79 | 317.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 82 | 317.92 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 101 | 318.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 221 | 320.06 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 5 | 3 |
| 222 | 320.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 9 |
| 232 | 320.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 233 | 320.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 13 |
| 236 | 320.15 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 247 | 320.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 251 | 320.22 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 8 |
| 303 | 320.57 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 332 | 320.72 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 346 | 320.94 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 349 | 321.02 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 4 | 16 |
| 477 | 321.73 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 505 | 321.89 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 547 | 322.04 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 578 | 322.17 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 1 | 13 |
| 593 | 322.29 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 23 |
| 678 | 322.52 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 720 | 322.78 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 760 | 323.00 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 816 | 323.27 | atmosphere | 1000 | 10 | > th | dose independent | no | NA | NA |
| 818 | 323.27 | atmosphere | 1000 | 10 | < th | dose independent | no | NA | NA |
| 820 | 323.27 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 3 | NA |
| 825 | 323.29 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 9 | 23 |
| 830 | 323.30 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 13 | 23 |
| 838 | 323.33 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 1 | 23 |
| 852 | 323.41 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 15 | 23 |
| 883 | 323.47 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 887 | 323.48 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 918 | 323.61 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 920 | 323.61 | atmosphere | 1005 | 270 | < th | dose independent | sin | 4 | NA |
| 929 | 323.64 | atmosphere | 1000 | 30 | > th | dose independent | sin | 4 | NA |
| 932 | 323.65 | atmosphere | 1000 | 270 | > th | dose independent | sin | 2 | NA |
| 953 | 323.75 | atmosphere | 1000 | 270 | > th | dose independent | sin | 4 | NA |
| 955 | 323.75 | temperature | 30 | 1440 | > th | dose dependent | sin | 8 | NA |
| 957 | 323.76 | atmosphere | 1000 | 10 | < th | dose independent | sin | 4 | NA |
| 969 | 323.80 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |