Os10g0428500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os10g0428500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.58 | 0.334 | 8.09 | -1.09 | 0.592 | -0.507 | -1.43 | -1.62 | 0.0824 | 21.5 | 992.1 | 19094 | -- | -- |
| 54.55 | 0.344 | 8.12 | -1.34 | 0.601 | -0.56 | -1.46 | -- | 0.055 | 21.5 | 995.8 | 20421 | -- | -- |
| 57.65 | 0.354 | 8.08 | -0.922 | 0.608 | -0.507 | -- | -1.74 | 0.087 | 21.4 | 1002 | 19535 | -- | -- |
| 61.98 | 0.367 | 8.12 | -1.34 | 0.603 | -0.577 | -- | -- | 0.0374 | 21.4 | 994.7 | 25156 | -- | -- |
| 78.35 | 0.412 | 8.06 | -0.898 | -- | -0.55 | -- | -1.87 | 0.0812 | -- | 1003 | 19620 | -- | -- |
| 62.17 | 0.37 | 8.13 | -1.21 | 0.596 | -- | -1.41 | -- | 0.00651 | 21.5 | -- | -- | -- | -- |
| 69.51 | 0.39 | 8.13 | -1.16 | 0.603 | -- | -- | -- | 0.00885 | 21.5 | -- | -- | -- | -- |
| 83.31 | 0.425 | 8.1 | -1.3 | -- | -0.564 | -- | -- | 0.0447 | -- | 996.5 | 20934 | -- | -- |
| 100.96 | 0.471 | 8.08 | -- | 0.587 | -0.599 | -- | -- | 0.22 | 21.4 | 987.7 | 12251 | -- | -- |
| 90.87 | 0.445 | 8.11 | -1.15 | -- | -- | -- | -- | 0.00695 | -- | -- | -- | -- | -- |
| 104.77 | 0.479 | 8.1 | -- | 0.602 | -- | -- | -- | 0.138 | 21.3 | -- | -- | -- | -- |
| 121.09 | 0.514 | 8.06 | -- | -- | -0.672 | -- | -- | 0.228 | -- | 987.7 | 12251 | -- | -- |
| 125.92 | 0.524 | 8.08 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 2 | 44.60 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 4 | 44.69 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 5 | 44.71 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 18 | 44.74 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 20 | 44.84 | radiation | 30 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 36 | 44.85 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 39 | 44.93 | humidity | 80 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 40 | 44.96 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 42 | 44.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 44 | 44.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 56 | 44.99 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 66 | 45.10 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 69 | 45.12 | humidity | 80 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 77 | 45.19 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 78 | 45.19 | radiation | 20 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 96 | 45.22 | humidity | 80 | 43200 | < th | dose dependent | sin | 12 | NA |
| 103 | 45.27 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 125 | 45.28 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 126 | 45.28 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 127 | 45.28 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 129 | 45.28 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 131 | 45.28 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 132 | 45.28 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 155 | 45.33 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 187 | 45.38 | radiation | 10 | 43200 | > th | dose independent | sin | 14 | NA |
| 216 | 45.39 | radiation | 20 | 43200 | < th | dose dependent | sin | 15 | NA |
| 223 | 45.40 | radiation | 1 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 245 | 45.41 | humidity | 60 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 255 | 45.44 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 280 | 45.45 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 307 | 45.48 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 308 | 45.48 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 469 | 45.60 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 472 | 45.61 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 474 | 45.61 | humidity | 60 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 483 | 45.61 | radiation | 10 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 489 | 45.61 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 548 | 45.66 | radiation | 10 | 43200 | < th | dose independent | sin | 18 | NA |
| 620 | 45.71 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 639 | 45.73 | radiation | 1 | 43200 | > th | dose dependent | sin | 15 | NA |
| 723 | 45.79 | temperature | 30 | 43200 | > th | dose dependent | sin | 9 | NA |
| 755 | 45.83 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 827 | 45.90 | humidity | 80 | 43200 | < th | dose independent | sin | 14 | NA |
| 868 | 45.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 880 | 45.94 | humidity | 80 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 902 | 45.97 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 914 | 45.99 | humidity | 80 | 43200 | > th | dose independent | sin | 14 | NA |