Os10g0428200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aspartic proteinase.
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Os10g0428200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aspartic proteinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.89 | 0.293 | 9.99 | -0.8 | 0.308 | 0.406 | 0.0329 | 0.0932 | -0.105 | 14.1 | 20.63 | 994 | -- | -- |
| 38.86 | 0.29 | 9.99 | -0.811 | 0.303 | 0.396 | 0.0122 | -- | -0.11 | 13.9 | 20.6 | 879 | -- | -- |
| 38.82 | 0.29 | 9.99 | -0.784 | 0.303 | 0.403 | -- | 0.125 | -0.101 | 13.9 | 20.64 | 855 | -- | -- |
| 38.86 | 0.29 | 9.99 | -0.812 | 0.304 | 0.395 | -- | -- | -0.11 | 13.9 | 20.61 | 879 | -- | -- |
| 41.56 | 0.3 | 9.99 | -0.763 | -- | 0.388 | -- | 0.0854 | -0.096 | -- | 20.7 | 212 | -- | -- |
| 43.17 | 0.308 | 9.97 | -0.664 | 0.267 | -- | 0.129 | -- | -0.0172 | 14.7 | -- | -- | -- | -- |
| 43.22 | 0.308 | 9.97 | -0.661 | 0.267 | -- | -- | -- | -0.0165 | 14.6 | -- | -- | -- | -- |
| 41.48 | 0.3 | 9.99 | -0.781 | -- | 0.387 | -- | -- | -0.098 | -- | 20.6 | 193 | -- | -- |
| 53.58 | 0.343 | 9.96 | -- | 0.244 | 0.159 | -- | -- | 0.0299 | 14.8 | 20.61 | 879 | -- | -- |
| 47.41 | 0.322 | 9.97 | -0.672 | -- | -- | -- | -- | -0.0232 | -- | -- | -- | -- | -- |
| 54.74 | 0.346 | 9.95 | -- | 0.28 | -- | -- | -- | 0.0571 | 14.6 | -- | -- | -- | -- |
| 56.65 | 0.351 | 9.96 | -- | -- | 0.245 | -- | -- | 0.00949 | -- | 20.61 | 172 | -- | -- |
| 59.33 | 0.36 | 9.96 | -- | -- | -- | -- | -- | 0.0514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 7 | 35.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 10 | 35.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 43 | 36.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 71 | 36.45 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 85 | 36.56 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 102 | 36.67 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 114 | 36.75 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 117 | 36.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 122 | 36.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 124 | 36.81 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 14 |
| 126 | 36.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 135 | 36.84 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 180 | 36.99 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 188 | 37.01 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 208 | 37.06 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 214 | 37.07 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 229 | 37.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 231 | 37.11 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 19 |
| 265 | 37.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 323 | 37.31 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 19 |
| 394 | 37.42 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 16 |
| 517 | 37.65 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 18 |
| 551 | 37.70 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 631 | 37.85 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 1 |
| 736 | 38.05 | radiation | 20 | 270 | > th | dose independent | rect. | 9 | 1 |
| 779 | 38.13 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 791 | 38.14 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 13 |
| 833 | 38.19 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 839 | 38.19 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 863 | 38.21 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 866 | 38.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 905 | 38.25 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 15 |
| 945 | 38.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 966 | 38.31 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 981 | 38.32 | wind | 3 | 4320 | > th | dose dependent | rect. | 8 | 1 |