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Os10g0427800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.43 (0.0214) R2 : 0.0127
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.109 (0.045) R2dN8 : 0.0164 R2N8 : 0.0127
σ : 0.403
deviance : 74.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.88 0.273 7.39 0.585 0.622 0.336 0.344 -0.608 0.00948 9.72 89 324 -- --
34.64 0.274 7.39 0.564 0.613 0.349 0.331 -- 0.0101 9.77 88.94 320 -- --
34.31 0.273 7.39 0.593 0.624 0.334 -- -0.534 0.009 9.76 89 312 -- --
34.83 0.275 7.38 0.569 0.64 0.322 -- -- 0.00561 9.84 89.57 248 -- --
49.82 0.329 7.39 0.543 -- 0.723 -- -0.458 0.0592 -- 84.8 609 -- --
36.53 0.283 7.39 0.595 0.698 -- 0.292 -- -0.0463 9.05 -- -- -- --
36.83 0.284 7.39 0.605 0.697 -- -- -- -0.0462 9.04 -- -- -- --
50.14 0.33 7.39 0.531 -- 0.731 -- -- 0.0653 -- 85.14 661 -- --
43.18 0.306 7.39 -- 0.616 0.41 -- -- -0.0379 9.99 89 272 -- --
64.79 0.376 7.41 0.604 -- -- -- -- -0.042 -- -- -- -- --
46.47 0.319 7.41 -- 0.698 -- -- -- -0.114 8.98 -- -- -- --
57.45 0.353 7.4 -- -- 0.781 -- -- 0.0161 -- 85.77 612 -- --
74.4 0.403 7.43 -- -- -- -- -- -0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.31 humidity 50 270 > th dose independent rect. 4 23
2 33.34 humidity 90 270 > th dose independent rect. 24 13
7 33.47 humidity 90 270 > th dose independent rect. 24 18
23 33.58 humidity 90 270 > th dose independent sin 7 NA
26 33.60 humidity 90 270 > th dose dependent rect. 1 19
47 33.64 humidity 90 270 > th dose dependent rect. 1 11
62 33.68 wind 3 4320 < th dose dependent rect. 8 1
74 33.73 humidity 90 270 > th dose independent rect. 1 4
78 33.74 wind 1 1440 < th dose dependent rect. 7 19
83 33.76 wind 1 4320 > th dose independent rect. 8 2
90 33.77 humidity 90 720 > th dose dependent sin 6 NA
112 33.81 humidity 90 270 < th dose independent sin 7 NA
113 33.81 humidity 90 4320 > th dose independent rect. 20 9
119 33.82 humidity 90 270 > th dose independent rect. 24 6
120 33.82 wind 1 1440 > th dose independent rect. 7 10
121 33.82 wind 1 1440 < th dose independent rect. 7 10
129 33.83 wind 1 1440 < th dose dependent sin 20 NA
132 33.83 wind 1 1440 < th dose dependent rect. 8 9
137 33.83 humidity 90 270 > th dose dependent rect. 7 23
157 33.86 humidity 50 1440 < th dose independent rect. 16 1
162 33.86 humidity 90 270 > th dose dependent rect. 1 4
170 33.87 wind 7 10 < th dose independent rect. 16 16
173 33.87 humidity 50 1440 < th dose dependent rect. 16 1
178 33.87 wind 1 1440 < th dose dependent rect. 7 17
192 33.89 wind 1 1440 < th dose independent rect. 7 7
199 33.89 wind 1 1440 < th dose dependent rect. 7 12
205 33.90 humidity 90 270 > th dose dependent rect. 3 2
214 33.91 wind 1 1440 > th dose independent rect. 7 7
216 33.91 temperature 30 720 > th dose dependent rect. 18 1
218 33.91 radiation 40 1440 > th dose dependent rect. 13 2
239 33.92 humidity 90 270 < th dose independent rect. 23 14
272 33.93 humidity 90 270 < th dose independent rect. 1 12
273 33.93 wind 1 1440 < th dose independent rect. 7 17
276 33.93 humidity 90 270 > th dose independent rect. 8 22
285 33.94 wind 7 90 < th dose independent rect. 15 16
303 33.95 atmosphere 1010 90 < th dose independent rect. 15 16
322 33.96 radiation 40 1440 > th dose dependent rect. 13 22
328 33.97 wind 3 30 < th dose dependent rect. 3 5
329 33.97 temperature 10 10 > th dose dependent rect. 16 15
337 33.98 humidity 50 270 > th dose independent rect. 7 17
354 33.99 humidity 90 270 > th dose independent rect. 16 20
356 33.99 humidity 90 270 < th dose independent rect. 17 21
366 34.00 humidity 90 4320 > th dose independent rect. 20 4
380 34.00 humidity 90 270 > th dose dependent rect. 16 21
382 34.01 humidity 50 270 < th dose independent rect. 13 4
387 34.01 radiation 1 90 > th dose independent rect. 16 14
404 34.02 wind 1 1440 > th dose independent rect. 7 17
426 34.03 humidity 50 270 < th dose dependent rect. 13 4
433 34.04 wind 1 270 < th dose independent rect. 3 2
435 34.04 temperature 20 10 > th dose independent rect. 3 5
445 34.04 humidity 90 270 > th dose dependent no NA NA
468 34.05 humidity 70 30 < th dose independent rect. 16 16
491 34.06 wind 1 1440 < th dose independent sin 19 NA
492 34.06 humidity 50 270 > th dose independent sin 17 NA
498 34.06 wind 7 10 < th dose independent rect. 8 8
511 34.06 humidity 90 270 < th dose independent rect. 20 17
522 34.06 wind 1 270 < th dose dependent rect. 3 2
537 34.07 humidity 50 270 < th dose independent sin 15 NA
542 34.07 humidity 50 270 > th dose independent rect. 9 15
549 34.07 radiation 40 1440 > th dose dependent rect. 8 3
587 34.07 wind 9 30 < th dose dependent rect. 16 16
637 34.08 wind 1 1440 < th dose independent rect. 7 19
646 34.08 humidity 60 720 < th dose dependent rect. 18 1
689 34.09 humidity 50 270 < th dose dependent sin 14 NA
707 34.10 humidity 50 1440 > th dose independent rect. 16 1
709 34.10 wind 1 1440 > th dose independent rect. 8 5
711 34.10 wind 1 1440 < th dose independent rect. 12 12
721 34.10 humidity 50 270 > th dose independent rect. 16 23
733 34.11 humidity 90 270 > th dose independent no NA NA
735 34.11 atmosphere 1005 43200 > th dose independent rect. 3 1
736 34.11 atmosphere 1005 43200 < th dose independent rect. 3 1
737 34.11 humidity 60 720 < th dose independent rect. 18 2
787 34.12 wind 1 1440 < th dose independent rect. 12 16
806 34.12 humidity 90 270 > th dose dependent rect. 10 23
810 34.13 humidity 90 4320 < th dose independent rect. 20 5
815 34.13 wind 7 90 < th dose independent rect. 7 8
816 34.13 temperature 15 90 > th dose independent rect. 7 8
831 34.13 atmosphere 1005 43200 < th dose independent rect. 16 13
863 34.13 humidity 50 270 < th dose dependent rect. 15 2
872 34.14 wind 3 4320 < th dose independent rect. 8 1
873 34.14 radiation 40 720 < th dose independent rect. 13 1
878 34.14 wind 1 1440 > th dose independent rect. 7 19
901 34.15 atmosphere 1005 43200 > th dose independent rect. 15 14
909 34.15 humidity 90 270 > th dose independent rect. 11 23
945 34.16 temperature 20 90 > th dose independent rect. 3 4
947 34.16 wind 1 1440 < th dose independent rect. 8 5
952 34.16 humidity 50 720 > th dose independent rect. 16 8