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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0427100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.28 (0.0371) R2 : 0.00101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0529 (0.0781) R2dN8 : 0.0013 R2N8 : 0.00101
σ : 0.698
deviance : 223.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.72 0.64 4.2 0.825 0.706 -1.05 -0.34 2.13 0.284 11.6 24.1 63 -- --
187.83 0.638 4.22 0.524 0.704 -0.868 -0.102 -- 0.228 11.3 23.24 53 -- --
186.14 0.635 4.21 0.767 0.711 -1.03 -- 1.79 0.268 11.5 24.1 63 -- --
187.73 0.638 4.24 0.524 0.691 -0.857 -- -- 0.198 11.3 24 54 -- --
201.8 0.662 4.23 0.785 -- -0.929 -- 1.69 0.232 -- 24.58 635 -- --
199.39 0.662 4.26 0.366 0.598 -- 0.0744 -- 0.0907 9.23 -- -- -- --
199.4 0.661 4.26 0.369 0.598 -- -- -- 0.0909 9.26 -- -- -- --
202.71 0.663 4.26 0.515 -- -0.783 -- -- 0.15 -- 25 631 -- --
194.44 0.649 4.25 -- 0.659 -0.718 -- -- 0.121 11 24.1 52 -- --
220.19 0.693 4.27 0.367 -- -- -- -- 0.0936 -- -- -- -- --
203 0.666 4.27 -- 0.598 -- -- -- 0.0498 9.21 -- -- -- --
209.49 0.674 4.28 -- -- -0.698 -- -- 0.0854 -- 25.1 614 -- --
223.74 0.698 4.28 -- -- -- -- -- 0.0529 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.78 temperature 15.0 90 > th dose dependent rect. 7 20
2 181.79 temperature 15.0 10 > th dose dependent rect. 7 22
16 183.11 temperature 30.0 30 < th dose independent rect. 11 20
22 183.29 temperature 30.0 90 < th dose dependent rect. 10 21
23 183.39 temperature 15.0 30 > th dose dependent rect. 7 15
25 183.39 temperature 25.0 10 > th dose dependent rect. 13 23
36 183.81 humidity 70.0 10 > th dose independent rect. 11 21
44 184.04 wind 5.0 10 < th dose independent rect. 13 22
45 184.05 temperature 10.0 90 > th dose dependent rect. 12 23
65 184.56 temperature 20.0 30 > th dose dependent rect. 7 17
100 185.06 temperature 30.0 720 < th dose independent rect. 11 1
109 185.15 humidity 60.0 90 > th dose dependent rect. 10 21
137 185.45 radiation 10.0 10 > th dose independent rect. 13 22
144 185.49 temperature 30.0 720 < th dose independent rect. 19 17
147 185.53 temperature 30.0 30 < th dose dependent rect. 11 9
151 185.56 temperature 30.0 90 < th dose dependent rect. 10 11
152 185.60 temperature 30.0 30 < th dose independent rect. 11 2
155 185.61 temperature 25.0 90 > th dose dependent rect. 17 23
157 185.63 atmosphere 1005.0 90 > th dose dependent rect. 11 9
168 185.73 humidity 70.0 90 > th dose independent rect. 10 21
177 185.80 temperature 30.0 90 < th dose dependent rect. 10 13
186 185.92 humidity 70.0 10 > th dose independent rect. 3 23
196 186.01 atmosphere 1005.0 10 > th dose independent rect. 11 2
199 186.03 wind 9.0 10 < th dose dependent rect. 13 22
212 186.15 atmosphere 995.0 30 > th dose dependent rect. 11 20
226 186.24 temperature 30.0 30 < th dose independent rect. 11 9
239 186.31 humidity 60.0 30 > th dose dependent rect. 16 21
245 186.34 temperature 30.0 30 < th dose independent rect. 11 12
247 186.34 wind 9.0 90 < th dose dependent rect. 7 12
265 186.47 temperature 25.0 30 > th dose dependent rect. 1 21
267 186.47 humidity 60.0 30 > th dose dependent rect. 3 23
272 186.49 temperature 25.0 30 > th dose dependent rect. 1 23
275 186.50 atmosphere 1005.0 10 > th dose independent rect. 11 6
278 186.50 temperature 25.0 30 > th dose dependent rect. 23 23
287 186.57 temperature 25.0 30 > th dose dependent rect. 4 18
294 186.59 temperature 25.0 30 > th dose dependent rect. 4 20
306 186.64 temperature 30.0 90 < th dose independent rect. 14 23
314 186.65 atmosphere 1005.0 30 > th dose dependent rect. 11 12
317 186.66 temperature 25.0 30 > th dose dependent no NA NA
341 186.72 temperature 30.0 30 < th dose independent rect. 11 15
362 186.76 wind 1.0 10 > th dose dependent rect. 11 15
434 186.91 wind 5.0 90 < th dose independent rect. 7 11
452 186.94 wind 1.0 10 > th dose dependent rect. 11 12
456 186.95 humidity 60.0 10 > th dose independent rect. 8 3
476 187.00 wind 9.0 30 < th dose independent rect. 3 23
536 187.13 atmosphere 995.0 30 > th dose dependent rect. 11 2
571 187.23 wind 7.0 10 < th dose dependent rect. 7 22
607 187.33 wind 1.0 720 > th dose dependent rect. 11 1
614 187.34 wind 1.0 90 > th dose dependent rect. 10 13
637 187.40 wind 5.0 90 < th dose independent rect. 7 21
665 187.50 temperature 30.0 90 < th dose independent rect. 15 16
668 187.51 atmosphere 1005.0 30 > th dose independent rect. 11 9
682 187.54 temperature 25.0 90 > th dose independent rect. 12 23
690 187.56 humidity 70.0 10 > th dose independent rect. 16 22
698 187.59 humidity 70.0 10 < th dose independent rect. 13 23
702 187.61 humidity 90.0 30 < th dose independent rect. 7 4
744 187.71 temperature 30.0 30 < th dose dependent rect. 3 23
752 187.73 radiation 40.0 10 < th dose independent rect. 12 23
766 187.77 atmosphere 995.0 30 > th dose dependent rect. 11 15
767 187.77 radiation 30.0 720 > th dose dependent rect. 15 18
776 187.80 atmosphere 1005.0 720 > th dose dependent rect. 11 1
789 187.86 wind 5.0 10 < th dose independent rect. 8 3
805 187.89 temperature 15.0 30 > th dose dependent rect. 13 14
821 187.95 wind 1.0 10 > th dose dependent rect. 11 20
826 187.97 precipitation 0.1 720 < th dose independent rect. 7 17
828 187.97 humidity 70.0 10 < th dose independent rect. 16 23
830 187.97 precipitation 0.1 720 < th dose dependent rect. 7 17
841 188.02 wind 7.0 90 < th dose dependent rect. 7 8
879 188.14 wind 3.0 720 > th dose independent rect. 11 1
902 188.23 atmosphere 1005.0 30 > th dose independent rect. 11 12
916 188.26 precipitation 0.1 720 < th dose independent rect. 12 7
918 188.26 precipitation 0.1 720 < th dose dependent rect. 12 7
922 188.26 temperature 30.0 30 < th dose dependent rect. 15 22
930 188.28 humidity 70.0 10 > th dose independent no NA NA
933 188.28 temperature 30.0 30 < th dose dependent sin 21 NA
941 188.29 temperature 30.0 30 < th dose dependent rect. 11 15
950 188.31 temperature 10.0 10 > th dose dependent sin 20 NA
952 188.31 wind 7.0 90 < th dose dependent rect. 7 21
965 188.34 radiation 30.0 720 > th dose independent rect. 15 18
966 188.34 precipitation 0.1 720 < th dose independent rect. 12 23
969 188.34 wind 7.0 10 < th dose dependent rect. 7 12
973 188.34 precipitation 0.1 720 < th dose dependent rect. 12 23
988 188.37 temperature 30.0 90 < th dose independent rect. 4 15
989 188.37 humidity 60.0 30 > th dose dependent rect. 11 2