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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0426500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0438) R2 : 0.00919
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.19 (0.0922) R2dN8 : 0.0119 R2N8 : 0.00919
σ : 0.825
deviance : 312.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.88 0.805 3.37 -0.0145 0.331 0.787 0.126 -1.48 -0.264 5.79 30.32 248 -- --
294.87 0.8 3.36 0.018 0.269 0.859 0.297 -- -0.229 5.6 37.01 239 -- --
293.91 0.798 3.37 -0.0126 0.329 0.781 -- -1.51 -0.265 5.86 30.31 247 -- --
294.77 0.8 3.36 0.0938 0.295 0.976 -- -- -0.254 5.73 37.27 239 -- --
298.42 0.805 3.37 0.019 -- 0.647 -- -1.34 -0.237 -- 32.58 231 -- --
307.02 0.821 3.35 0.0765 0.259 -- -0.53 -- -0.181 10.8 -- -- -- --
308.08 0.822 3.35 0.0532 0.269 -- -- -- -0.184 10.1 -- -- -- --
299.1 0.805 3.36 0.0534 -- 0.745 -- -- -0.239 -- 37.26 218 -- --
294.88 0.8 3.36 -- 0.312 0.985 -- -- -0.259 5.71 37.23 239 -- --
312.46 0.826 3.35 0.0495 -- -- -- -- -0.184 -- -- -- -- --
308.15 0.821 3.35 -- 0.269 -- -- -- -0.19 10.1 -- -- -- --
299.14 0.806 3.37 -- -- 0.801 -- -- -0.247 -- 37.23 220 -- --
312.52 0.825 3.35 -- -- -- -- -- -0.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.04 temperature 30.0 10 > th dose independent rect. 12 1
3 283.56 temperature 25.0 10 > th dose dependent rect. 12 1
6 288.65 temperature 10.0 1440 > th dose independent rect. 13 1
10 288.65 atmosphere 995.0 1440 > th dose independent rect. 13 1
13 288.65 temperature 10.0 1440 > th dose independent rect. 14 23
16 289.05 humidity 70.0 30 < th dose independent rect. 12 1
18 289.27 radiation 40.0 30 > th dose dependent rect. 12 1
20 289.40 atmosphere 1015.0 30 < th dose dependent rect. 12 1
22 289.47 radiation 40.0 30 > th dose independent rect. 12 1
24 289.69 temperature 25.0 10 > th dose dependent sin 9 NA
26 289.73 radiation 30.0 10 < th dose independent rect. 6 23
31 290.09 atmosphere 1010.0 30 < th dose independent rect. 12 1
35 290.28 humidity 50.0 30 > th dose independent rect. 12 1
36 290.36 temperature 25.0 30 > th dose independent rect. 18 17
37 290.38 atmosphere 1000.0 30 > th dose independent rect. 6 23
39 290.51 atmosphere 995.0 30 > th dose dependent rect. 13 23
40 290.54 wind 3.0 30 > th dose independent rect. 12 1
41 290.54 wind 7.0 30 < th dose independent rect. 12 1
42 290.57 radiation 10.0 30 > th dose independent rect. 12 1
44 290.74 atmosphere 1015.0 30 < th dose dependent rect. 21 9
47 290.85 radiation 30.0 10 < th dose independent rect. 6 8
48 290.86 wind 1.0 30 > th dose dependent rect. 12 1
50 290.89 temperature 10.0 30 > th dose independent rect. 12 1
52 290.89 atmosphere 995.0 30 > th dose independent rect. 12 1
55 290.89 precipitation 0.1 30 < th dose independent rect. 12 1
56 290.89 temperature 10.0 30 > th dose independent rect. 13 23
57 290.89 precipitation 0.1 30 < th dose dependent rect. 12 1
59 290.91 atmosphere 1000.0 30 > th dose independent rect. 13 23
60 290.92 radiation 30.0 10 < th dose independent rect. 6 10
68 291.37 wind 9.0 30 < th dose dependent rect. 12 1
70 291.49 humidity 90.0 30 < th dose dependent rect. 12 1
71 291.53 atmosphere 1010.0 30 < th dose dependent rect. 21 18
72 291.55 humidity 50.0 30 > th dose dependent rect. 12 1
75 291.67 humidity 70.0 4320 > th dose independent rect. 22 9
86 292.02 atmosphere 1005.0 270 < th dose independent rect. 2 9
89 292.03 atmosphere 995.0 30 > th dose dependent rect. 12 1
92 292.08 temperature 25.0 10 > th dose independent rect. 6 5
96 292.21 atmosphere 1005.0 10 < th dose independent rect. 4 2
99 292.32 atmosphere 1005.0 90 < th dose independent rect. 4 1
106 292.37 atmosphere 995.0 90 > th dose dependent rect. 17 18
119 292.46 radiation 30.0 10 < th dose independent rect. 6 15
120 292.46 radiation 40.0 30 < th dose dependent rect. 6 23
130 292.61 atmosphere 1010.0 720 < th dose dependent rect. 21 1
136 292.69 atmosphere 995.0 30 > th dose dependent rect. 6 23
143 292.93 wind 9.0 30 < th dose independent rect. 13 23
145 292.94 atmosphere 1005.0 270 < th dose dependent rect. 17 19
147 292.96 temperature 25.0 4320 > th dose dependent rect. 5 3
150 292.99 radiation 20.0 270 < th dose independent rect. 6 3
154 293.04 temperature 25.0 10 > th dose dependent rect. 18 18
158 293.12 radiation 40.0 270 < th dose independent rect. 6 12
163 293.16 radiation 30.0 10 < th dose independent rect. 17 23
164 293.17 radiation 30.0 10 < th dose independent rect. 6 6
166 293.20 temperature 25.0 270 > th dose independent rect. 2 8
170 293.22 atmosphere 995.0 30 > th dose dependent rect. 6 15
176 293.30 atmosphere 1000.0 30 > th dose independent rect. 6 15
183 293.36 radiation 10.0 270 < th dose independent rect. 6 1
187 293.37 atmosphere 1010.0 30 < th dose dependent rect. 5 1
210 293.55 atmosphere 1000.0 90 > th dose independent rect. 17 18
211 293.56 temperature 25.0 10 > th dose dependent rect. 20 16
214 293.59 atmosphere 995.0 30 > th dose dependent rect. 15 21
215 293.59 atmosphere 1010.0 30 < th dose dependent rect. 16 23
219 293.61 temperature 25.0 90 > th dose dependent rect. 20 17
227 293.65 atmosphere 1010.0 30 < th dose dependent rect. 5 10
231 293.68 radiation 30.0 270 > th dose independent rect. 7 8
253 293.70 atmosphere 1015.0 10 < th dose dependent rect. 21 21
259 293.74 radiation 30.0 10 < th dose independent rect. 6 20
261 293.74 atmosphere 995.0 270 > th dose dependent rect. 15 18
270 293.78 atmosphere 1000.0 30 > th dose independent rect. 22 23
280 293.88 radiation 30.0 270 > th dose independent rect. 7 1
305 293.93 atmosphere 1000.0 10 > th dose independent rect. 18 18
313 293.97 atmosphere 1005.0 270 < th dose independent sin 6 NA
335 294.04 radiation 30.0 10 < th dose independent rect. 18 20
371 294.17 radiation 30.0 10 < th dose independent rect. 6 18
372 294.17 radiation 30.0 270 > th dose independent rect. 14 23
377 294.19 radiation 30.0 270 > th dose independent sin 2 NA
393 294.25 atmosphere 1000.0 10 > th dose independent rect. 6 6
399 294.26 atmosphere 995.0 10 > th dose dependent rect. 6 6
411 294.29 temperature 25.0 270 > th dose dependent rect. 2 6
413 294.30 radiation 20.0 270 < th dose independent rect. 6 5
415 294.30 atmosphere 995.0 30 > th dose dependent rect. 22 23
423 294.32 radiation 20.0 10 > th dose dependent rect. 12 21
424 294.33 atmosphere 1000.0 720 < th dose independent rect. 3 1
433 294.37 radiation 40.0 270 > th dose independent rect. 12 23
434 294.37 temperature 25.0 270 > th dose dependent rect. 24 13
437 294.38 atmosphere 1010.0 270 < th dose dependent sin 9 NA
440 294.39 temperature 30.0 10 < th dose independent rect. 6 10
442 294.39 atmosphere 1000.0 90 < th dose dependent rect. 3 11
444 294.40 atmosphere 1000.0 10 < th dose dependent rect. 3 11
451 294.41 atmosphere 1010.0 30 < th dose dependent sin 7 NA
456 294.42 radiation 30.0 270 > th dose independent no NA NA
581 294.42 temperature 25.0 270 > th dose dependent rect. 9 3
611 294.50 radiation 30.0 270 < th dose dependent rect. 6 3
615 294.51 radiation 30.0 10 > th dose independent rect. 12 21
629 294.54 radiation 40.0 270 < th dose independent rect. 5 23
646 294.58 temperature 30.0 10 < th dose independent rect. 6 15
647 294.58 atmosphere 1000.0 30 > th dose independent rect. 15 21
683 294.63 atmosphere 1010.0 720 < th dose dependent rect. 19 6
689 294.65 temperature 25.0 10 > th dose dependent rect. 3 11
705 294.69 radiation 40.0 270 < th dose independent rect. 3 23
711 294.71 temperature 25.0 10 > th dose dependent rect. 5 9
720 294.73 atmosphere 1005.0 90 < th dose independent rect. 20 17
734 294.75 temperature 30.0 30 < th dose independent rect. 12 1
740 294.76 temperature 25.0 90 > th dose dependent rect. 5 8
745 294.77 radiation 40.0 270 > th dose independent rect. 12 1
747 294.77 temperature 25.0 270 > th dose dependent rect. 7 6
750 294.77 atmosphere 1010.0 90 < th dose dependent rect. 3 11
754 294.78 atmosphere 1005.0 270 < th dose independent rect. 18 17
767 294.80 atmosphere 1010.0 30 < th dose dependent rect. 2 13
777 294.82 wind 1.0 4320 > th dose dependent rect. 1 10
778 294.82 temperature 25.0 10 > th dose dependent rect. 24 14
813 294.87 humidity 70.0 30 < th dose independent rect. 16 17
866 294.93 atmosphere 1005.0 90 < th dose dependent rect. 2 22
867 294.93 atmosphere 1015.0 30 < th dose dependent rect. 7 23
896 294.99 radiation 40.0 10 < th dose dependent rect. 6 10