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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0425700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.4 (0.0296) R2 : 0.74
β1 : 2.58 (0.108) R2dD : 0.338 R2D : 0.258
β2 : 1.48 (0.0902) R2dC : 0.212 R2C : 0.314
β3 : -0.976 (0.0969) R2dE : 0.08 R2E : 0.188
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.641 (0.0632) R2dN8 : 0.0794 R2N8 : -0.0112
σ : 0.552
deviance : 140.23
__
_____
C
peak time of C : 17.9
E
wheather : radiation
threshold : 0.7934
memory length : 31
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 3.58

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.99 0.548 5.41 2.52 1.49 -0.957 -0.14 -1.56 0.624 17.9 0.8602 31 5.01 3.57
139.78 0.551 5.41 2.53 1.46 -0.992 0.36 -- 0.614 17.9 0.7894 31 5.03 3.58
136.02 0.543 5.41 2.53 1.49 -0.959 -- -1.49 0.625 18 0.8632 31 5 3.57
140.23 0.552 5.4 2.58 1.48 -0.976 -- -- 0.641 17.9 0.7934 31 5.03 3.58
155.98 0.582 5.38 2.53 -- -1.81 -- -1.43 0.55 -- -23.83 307 0.708 7.1
169.9 0.611 5.43 2.56 1.95 -- 0.638 -- 0.585 18.1 -- -- -- --
170.9 0.612 5.42 2.55 1.96 -- -- -- 0.587 18.1 -- -- -- --
157.32 0.584 5.36 2.59 -- -1.87 -- -- 0.672 -- -20.97 312 0.582 7.1
317.33 0.834 5.47 -- 1.48 -0.826 -- -- 0.318 18.1 0.9594 39 5.03 3.7
369.52 0.898 5.39 2.5 -- -- -- -- 0.544 -- -- -- -- --
342.43 0.866 5.49 -- 1.92 -- -- -- 0.303 18.2 -- -- -- --
332.73 0.85 5.43 -- -- -1.87 -- -- 0.384 -- -6.683 348 0.239 7.2
533.83 1.08 5.45 -- -- -- -- -- 0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.45 radiation 1.0 30 > th dose independent rect. 5 3
12 137.08 atmosphere 1015.0 90 < th dose dependent rect. 4 4
15 137.46 precipitation 0.1 270 < th dose independent rect. 3 3
16 137.46 precipitation 0.1 270 < th dose dependent rect. 3 3
17 138.00 atmosphere 1015.0 10 < th dose dependent rect. 5 3
20 138.27 wind 5.0 270 < th dose independent rect. 3 3
34 138.72 temperature 15.0 90 > th dose independent rect. 8 20
49 139.28 temperature 15.0 270 > th dose independent rect. 6 21
50 139.34 wind 9.0 90 < th dose independent rect. 8 20
54 139.43 wind 9.0 270 < th dose independent rect. 6 21
61 139.60 temperature 10.0 90 > th dose independent rect. 4 4
63 139.60 temperature 30.0 90 < th dose independent rect. 4 4
64 139.60 humidity 50.0 90 > th dose independent rect. 4 4
66 139.60 atmosphere 995.0 90 > th dose independent rect. 4 4
67 139.60 atmosphere 1015.0 90 < th dose independent rect. 4 4
69 139.63 radiation 40.0 90 < th dose independent rect. 4 4
71 139.71 precipitation 0.1 270 < th dose independent rect. 2 5
72 139.71 precipitation 0.1 270 < th dose dependent rect. 2 5
75 139.78 radiation 10.0 270 < th dose independent rect. 3 3
95 139.93 wind 9.0 270 < th dose dependent rect. 3 3
99 140.15 wind 9.0 10 < th dose independent rect. 8 21
100 140.16 precipitation 0.1 10 < th dose independent rect. 5 3
101 140.16 precipitation 0.1 10 < th dose dependent rect. 5 3
103 140.19 wind 5.0 270 < th dose independent rect. 2 5
117 140.23 radiation 40.0 270 < th dose dependent rect. 3 3
120 140.34 precipitation 0.1 90 < th dose independent rect. 8 20
121 140.34 precipitation 0.1 90 < th dose dependent rect. 8 20
137 140.45 wind 7.0 10 < th dose independent rect. 5 3
139 140.45 temperature 10.0 10 > th dose independent rect. 5 3
141 140.45 temperature 30.0 10 < th dose independent rect. 5 3
142 140.45 humidity 50.0 10 > th dose independent rect. 5 3
144 140.45 atmosphere 995.0 10 > th dose independent rect. 5 3
145 140.45 atmosphere 1015.0 10 < th dose independent rect. 5 3
146 140.45 temperature 10.0 10 > th dose independent rect. 8 21
148 140.51 precipitation 0.1 270 < th dose independent rect. 6 21
149 140.51 precipitation 0.1 270 < th dose dependent rect. 6 21
150 140.55 radiation 40.0 10 < th dose independent rect. 5 3
170 141.02 radiation 1.0 30 > th dose independent sin 10 NA
175 141.10 atmosphere 995.0 90 > th dose independent rect. 8 20
181 141.21 radiation 1.0 30 < th dose independent sin 10 NA
213 141.53 temperature 10.0 270 > th dose independent rect. 2 5
215 141.53 temperature 30.0 270 < th dose independent rect. 2 5
216 141.53 humidity 50.0 270 > th dose independent rect. 2 5
218 141.53 atmosphere 995.0 270 > th dose independent rect. 2 5
220 141.53 radiation 30.0 270 < th dose independent rect. 2 5
235 141.66 radiation 1.0 30 < th dose dependent sin 10 NA
250 141.72 atmosphere 995.0 10 > th dose independent rect. 8 21
264 141.84 temperature 30.0 270 < th dose dependent rect. 4 1
287 141.90 radiation 1.0 30 < th dose dependent rect. 21 20
300 141.92 temperature 30.0 270 < th dose dependent rect. 3 3
310 142.10 temperature 10.0 90 > th dose dependent rect. 4 4
315 142.16 temperature 10.0 10 > th dose dependent rect. 5 3
325 142.31 temperature 15.0 270 > th dose independent rect. 6 9
328 142.38 humidity 50.0 14400 > th dose independent rect. 5 4
337 142.48 wind 9.0 10 < th dose dependent rect. 5 3
346 142.56 radiation 1.0 30 < th dose dependent rect. 21 17
359 142.59 radiation 1.0 30 < th dose independent rect. 21 17
404 143.21 wind 9.0 1440 < th dose independent rect. 5 4
405 143.21 temperature 10.0 1440 > th dose independent rect. 5 4
408 143.21 humidity 50.0 1440 > th dose independent rect. 5 4
410 143.21 atmosphere 995.0 1440 > th dose independent rect. 5 4
411 143.21 atmosphere 1015.0 1440 < th dose independent rect. 5 4
412 143.21 temperature 10.0 1440 > th dose independent rect. 9 20
416 143.25 wind 9.0 90 < th dose dependent rect. 8 20
428 143.32 atmosphere 995.0 270 > th dose independent rect. 6 21
445 143.48 wind 7.0 270 < th dose independent rect. 7 8
457 143.61 humidity 90.0 90 < th dose independent rect. 8 8
472 143.66 temperature 10.0 270 > th dose dependent rect. 4 2
480 143.79 radiation 1.0 30 < th dose dependent rect. 21 15
483 143.81 radiation 1.0 30 < th dose independent rect. 21 15
485 143.81 radiation 1.0 30 < th dose dependent rect. 21 11
489 143.82 temperature 30.0 90 < th dose dependent rect. 4 5
490 143.83 radiation 1.0 30 < th dose independent rect. 21 11
519 144.00 temperature 30.0 270 < th dose dependent rect. 2 5
526 144.10 radiation 1.0 30 < th dose dependent rect. 21 9
557 144.19 radiation 1.0 30 < th dose independent rect. 21 9
679 144.71 wind 9.0 270 < th dose dependent rect. 7 8
698 144.80 wind 1.0 270 > th dose independent rect. 3 3
720 144.98 temperature 10.0 90 > th dose independent rect. 21 7
721 144.98 temperature 30.0 90 < th dose independent rect. 21 7
722 144.98 humidity 50.0 90 > th dose independent rect. 21 7
725 144.98 atmosphere 995.0 90 > th dose independent rect. 21 7
726 144.98 radiation 1.0 90 < th dose independent rect. 21 7
731 144.98 temperature 10.0 90 > th dose independent rect. 4 17
732 144.98 atmosphere 1015.0 90 < th dose independent rect. 4 17
733 144.98 radiation 1.0 90 < th dose dependent rect. 21 7
739 144.99 wind 9.0 90 < th dose independent rect. 21 7
743 145.01 precipitation 0.1 270 < th dose independent rect. 3 16
745 145.01 precipitation 0.1 270 < th dose dependent rect. 3 16
746 145.05 humidity 50.0 270 > th dose dependent rect. 3 3
754 145.10 wind 1.0 30 > th dose independent rect. 5 3
807 145.59 precipitation 0.1 90 < th dose independent rect. 21 7
809 145.59 precipitation 0.1 90 < th dose dependent rect. 21 7
822 145.72 atmosphere 1015.0 90 < th dose independent rect. 8 20
846 145.77 precipitation 0.1 270 < th dose independent rect. 19 8
848 145.77 precipitation 0.1 270 < th dose dependent rect. 19 8
849 145.78 wind 9.0 10 < th dose independent rect. 21 8
858 145.83 temperature 10.0 10 > th dose independent rect. 21 8
859 145.83 temperature 30.0 10 < th dose independent rect. 21 8
860 145.83 humidity 50.0 10 > th dose independent rect. 21 8
863 145.83 atmosphere 995.0 10 > th dose independent rect. 21 8
869 145.83 temperature 10.0 10 > th dose independent rect. 5 16
871 145.83 atmosphere 1015.0 10 < th dose independent rect. 5 16
872 145.84 wind 9.0 90 < th dose independent rect. 4 17
885 145.91 precipitation 0.1 10 < th dose independent rect. 5 16
887 145.91 precipitation 0.1 10 < th dose dependent rect. 5 16
890 145.94 precipitation 0.1 270 < th dose independent rect. 2 18
891 145.94 precipitation 0.1 270 < th dose dependent rect. 2 18
894 145.97 radiation 1.0 270 < th dose dependent rect. 18 9
919 146.03 precipitation 0.1 270 < th dose independent rect. 6 9
920 146.03 precipitation 0.1 270 < th dose dependent rect. 6 9
968 146.16 atmosphere 995.0 90 > th dose independent rect. 8 8
972 146.17 precipitation 0.1 270 < th dose independent rect. 15 16
974 146.17 precipitation 0.1 270 < th dose dependent rect. 15 16