Os10g0425400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os10g0425400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 378.77 | 0.914 | 4.83 | -3.21 | 2.6e-05 | 8.19 | -2.64 | 20.6 | -0.255 | 5.8 | 0.1753 | 1396 | 17.3 | -- |
| 442.02 | 0.979 | 4.41 | -2.24 | 0.195 | 2.71 | -2.37 | -- | 0.123 | 5.44 | 3.18 | 1400 | 19.3 | -- |
| 391.41 | 0.921 | 4.82 | -3.18 | 0.198 | 8.94 | -- | 22.2 | -0.2 | 8.59 | 0.1893 | 1417 | 17.7 | -- |
| 447.57 | 0.985 | 4.39 | -2.39 | 0.218 | 2.57 | -- | -- | 0.164 | 11.6 | 3.666 | 1402 | 17.7 | -- |
| 393.08 | 0.923 | 4.85 | -3.28 | -- | 8.91 | -- | 22.6 | -0.239 | -- | 0.1871 | 1414 | 17.6 | -- |
| 517.95 | 1.07 | 4.52 | -2.93 | 0.00465 | -- | 2.49 | -- | -0.305 | 16.8 | -- | -- | -- | -- |
| 527.35 | 1.08 | 4.5 | -2.91 | 0.332 | -- | -- | -- | -0.291 | 10.8 | -- | -- | -- | -- |
| 449.16 | 0.987 | 4.43 | -2.54 | -- | 2.58 | -- | -- | 0.0642 | -- | 3.612 | 1360 | 15.9 | -- |
| 461.92 | 1 | 4.4 | -- | 0.248 | 2.59 | -- | -- | 0.538 | 14.4 | 0.009999 | 46809 | 17.6 | -- |
| 534.17 | 1.08 | 4.51 | -2.92 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 750.69 | 1.28 | 4.43 | -- | 0.358 | -- | -- | -- | 0.0336 | 11.4 | -- | -- | -- | -- |
| 462.86 | 1 | 4.4 | -- | -- | 2.52 | -- | -- | 0.56 | -- | 8.194e-08 | 46798 | 18.8 | -- |
| 758.74 | 1.29 | 4.44 | -- | -- | -- | -- | -- | 0.031 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 393.63 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 65 | 397.23 | temperature | 25 | 14400 | > th | dose dependent | sin | 0 | NA |
| 91 | 397.43 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 92 | 397.44 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 101 | 397.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 228 | 398.70 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 244 | 398.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 246 | 398.79 | temperature | 10 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 249 | 398.80 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 305 | 399.03 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 314 | 399.10 | temperature | 15 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 378 | 399.34 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 379 | 399.34 | temperature | 10 | 14400 | > th | dose dependent | sin | 2 | NA |
| 705 | 400.22 | temperature | 10 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 721 | 400.26 | temperature | 10 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 737 | 400.30 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 819 | 400.43 | temperature | 10 | 14400 | > th | dose dependent | rect. | 10 | 17 |
| 842 | 400.45 | temperature | 30 | 14400 | < th | dose dependent | rect. | 24 | 17 |
| 916 | 400.58 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 4 |