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Os10g0421800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.74 (0.0278) R2 : 0.904
β1 : -0.773 (0.102) R2dD : 0.0126 R2D : -0.00682
β2 : 5.24 (0.0837) R2dC : 1.16 R2C : 0.581
β3 : -2.66 (0.0905) R2dE : 0.256 R2E : -0.337
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.816 (0.0595) R2dN8 : 0.0531 R2N8 : 0.0516
σ : 0.52
deviance : 124.59
__
_____
C
peak time of C : 15.8
E
wheather : temperature
threshold : 14.84
memory length : 245
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.17
open length of G : 19.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.41 0.522 9.74 -0.788 5.26 -2.68 -0.233 -0.453 -0.822 15.8 14.89 250 1.13 19.4
123.8 0.518 9.74 -0.769 5.24 -2.67 -0.521 -- -0.814 15.8 14.87 246 1.15 19.5
123.45 0.517 9.74 -0.793 5.25 -2.68 -- -0.614 -0.819 15.8 14.8 244 1.19 19.5
124.59 0.52 9.74 -0.773 5.24 -2.66 -- -- -0.816 15.8 14.84 245 1.17 19.5
1135.86 1.57 9.62 -1.24 -- -1.85 -- -0.645 -0.543 -- 24.12 1300 0.904 19.9
257.13 0.752 9.79 -0.939 4.25 -- -0.452 -- -0.938 17 -- -- -- --
257.65 0.752 9.79 -0.939 4.24 -- -- -- -0.94 17 -- -- -- --
1087.99 1.54 9.64 -0.388 -- -1.85 -- -- -0.489 -- 24.1 2730 0.0149 21.5
140.29 0.552 9.72 -- 5.28 -2.68 -- -- -0.723 15.8 14.94 240 1.25 19.4
1203 1.62 9.75 -1.09 -- -- -- -- -1.05 -- -- -- -- --
280.9 0.784 9.77 -- 4.26 -- -- -- -0.836 17 -- -- -- --
1066.24 1.52 9.6 -- -- -1.91 -- -- -0.35 -- 24 2714 7.92 23
1234.47 1.64 9.72 -- -- -- -- -- -0.927 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.04 temperature 15.0 270 > th dose independent rect. 1 19
4 128.53 precipitation 0.1 270 < th dose independent rect. 20 5
5 128.53 precipitation 0.1 270 < th dose dependent rect. 20 5
6 128.60 wind 7.0 270 < th dose independent rect. 20 5
8 128.75 radiation 1.0 270 < th dose dependent rect. 20 5
9 128.76 temperature 10.0 270 > th dose independent rect. 20 5
10 128.76 temperature 30.0 270 < th dose independent rect. 20 5
11 128.76 humidity 50.0 270 > th dose independent rect. 20 5
14 128.76 atmosphere 995.0 270 > th dose independent rect. 20 5
15 128.76 radiation 1.0 270 < th dose independent rect. 20 5
21 128.76 atmosphere 1015.0 270 < th dose independent rect. 1 19
27 130.19 atmosphere 995.0 270 > th dose independent rect. 1 19
28 130.57 temperature 10.0 270 > th dose dependent rect. 1 5
29 130.65 wind 9.0 270 < th dose independent rect. 1 19
31 131.47 wind 7.0 270 < th dose independent rect. 21 3
33 131.81 precipitation 0.1 270 < th dose independent rect. 21 3
34 131.81 precipitation 0.1 270 < th dose dependent rect. 21 3
37 131.99 temperature 10.0 270 > th dose independent rect. 21 3
38 131.99 temperature 30.0 270 < th dose independent rect. 21 3
39 131.99 humidity 50.0 270 > th dose independent rect. 21 3
42 131.99 atmosphere 995.0 270 > th dose independent rect. 21 3
43 131.99 radiation 1.0 270 < th dose independent rect. 21 3
49 131.99 radiation 1.0 270 < th dose dependent rect. 21 3
77 134.10 radiation 20.0 90 < th dose dependent rect. 3 19
81 134.37 temperature 15.0 90 > th dose independent rect. 3 18
95 134.62 atmosphere 1015.0 90 < th dose independent rect. 3 18
101 134.68 wind 9.0 270 < th dose independent rect. 24 21
104 134.79 precipitation 0.1 270 < th dose independent rect. 1 19
105 134.79 precipitation 0.1 270 < th dose dependent rect. 1 19
122 134.97 radiation 10.0 270 < th dose dependent rect. 1 18
127 135.22 precipitation 0.1 270 < th dose independent rect. 6 19
128 135.22 precipitation 0.1 270 < th dose dependent rect. 6 19
130 135.55 wind 1.0 270 > th dose independent rect. 20 5
133 136.14 wind 9.0 270 < th dose dependent rect. 21 3
135 136.46 atmosphere 995.0 270 > th dose independent rect. 24 21
138 136.71 radiation 10.0 90 < th dose independent rect. 3 19
142 136.81 wind 9.0 90 < th dose independent rect. 3 18
147 137.07 wind 9.0 270 < th dose dependent rect. 20 5
168 137.53 radiation 20.0 270 < th dose dependent rect. 1 6
198 138.17 humidity 50.0 270 > th dose dependent rect. 1 5
205 138.43 atmosphere 995.0 90 > th dose independent rect. 3 18
208 138.50 wind 9.0 270 < th dose dependent rect. 1 5
212 138.80 wind 9.0 270 < th dose independent rect. 6 19
213 138.83 humidity 50.0 270 > th dose dependent rect. 21 3
214 138.89 atmosphere 1010.0 270 < th dose independent rect. 1 5
216 138.90 radiation 10.0 270 < th dose independent rect. 1 5
219 139.03 precipitation 0.1 270 < th dose independent rect. 1 5
220 139.03 precipitation 0.1 270 < th dose dependent rect. 1 5
223 139.07 temperature 10.0 270 > th dose independent rect. 1 5
225 139.07 temperature 30.0 270 < th dose independent rect. 1 5
226 139.07 humidity 50.0 270 > th dose independent rect. 1 5
229 139.07 atmosphere 995.0 270 > th dose independent rect. 1 5
234 139.07 temperature 10.0 270 > th dose independent rect. 6 19
235 139.08 wind 9.0 270 < th dose independent rect. 1 5
246 139.50 humidity 50.0 90 > th dose dependent rect. 21 6
260 140.11 radiation 30.0 270 < th dose independent rect. 15 15
261 140.12 radiation 30.0 90 < th dose dependent rect. 3 6
310 140.61 precipitation 0.1 270 < th dose independent rect. 5 21
311 140.61 precipitation 0.1 270 < th dose dependent rect. 5 21
315 140.79 temperature 30.0 90 < th dose dependent rect. 21 6
326 141.41 radiation 1.0 270 < th dose independent rect. 1 18
361 142.55 precipitation 0.1 90 < th dose independent rect. 3 18
362 142.55 precipitation 0.1 90 < th dose dependent rect. 3 18
365 142.66 humidity 60.0 90 > th dose dependent rect. 3 6
379 143.49 wind 5.0 90 < th dose dependent rect. 3 6
384 143.56 humidity 50.0 270 > th dose dependent rect. 2 3
441 144.28 humidity 50.0 270 > th dose independent rect. 1 18
444 144.37 radiation 20.0 90 < th dose independent rect. 3 6
448 144.56 wind 9.0 270 < th dose independent rect. 5 21
452 144.64 wind 9.0 270 < th dose dependent rect. 2 3
454 144.66 temperature 30.0 270 < th dose dependent rect. 21 4
457 144.76 wind 9.0 270 < th dose independent rect. 2 3
458 144.76 temperature 10.0 270 > th dose independent rect. 2 3
460 144.76 temperature 30.0 270 < th dose independent rect. 2 3
461 144.76 humidity 50.0 270 > th dose independent rect. 2 3
464 144.76 atmosphere 995.0 270 > th dose independent rect. 2 3
465 144.76 atmosphere 1010.0 270 < th dose independent rect. 2 3
467 144.76 radiation 20.0 270 < th dose independent rect. 2 3
470 144.76 temperature 10.0 270 > th dose independent rect. 5 21
471 144.79 radiation 40.0 270 < th dose dependent rect. 2 3
476 144.84 radiation 1.0 270 < th dose independent rect. 2 3
487 145.08 temperature 10.0 270 > th dose independent rect. 6 9
488 145.08 atmosphere 1015.0 270 < th dose independent rect. 6 9
489 145.08 temperature 10.0 270 > th dose independent rect. 15 15
490 145.09 precipitation 0.1 270 < th dose independent rect. 2 3
491 145.09 precipitation 0.1 270 < th dose dependent rect. 2 3
493 145.11 precipitation 0.1 270 < th dose independent rect. 6 9
494 145.11 precipitation 0.1 270 < th dose dependent rect. 6 9
507 145.61 wind 9.0 270 < th dose independent rect. 6 9
510 145.67 wind 5.0 90 < th dose dependent rect. 3 4
520 145.90 radiation 40.0 270 < th dose dependent rect. 15 15
549 146.91 wind 7.0 10 < th dose independent rect. 23 4
560 147.11 wind 9.0 270 < th dose independent rect. 15 15
562 147.14 temperature 10.0 10 > th dose independent rect. 23 4
563 147.14 temperature 30.0 10 < th dose independent rect. 23 4
564 147.14 humidity 50.0 10 > th dose independent rect. 23 4
567 147.14 atmosphere 995.0 10 > th dose independent rect. 23 4
568 147.14 radiation 1.0 10 < th dose independent rect. 23 4
573 147.14 temperature 10.0 10 > th dose independent rect. 3 20
575 147.14 atmosphere 1015.0 10 < th dose independent rect. 3 20
577 147.14 radiation 1.0 10 < th dose dependent rect. 23 4
584 147.22 wind 1.0 270 > th dose independent rect. 6 19
587 147.25 precipitation 0.1 10 < th dose independent rect. 23 4
588 147.25 precipitation 0.1 10 < th dose dependent rect. 23 4
590 147.32 atmosphere 995.0 270 > th dose independent rect. 6 9
615 147.74 temperature 15.0 270 > th dose independent rect. 11 10
619 147.84 temperature 30.0 270 < th dose dependent rect. 23 1
687 148.63 atmosphere 995.0 270 > th dose independent rect. 15 15
698 149.00 precipitation 0.1 10 < th dose independent rect. 3 20
699 149.00 precipitation 0.1 10 < th dose dependent rect. 3 20
701 149.03 wind 9.0 10 < th dose independent rect. 3 20
735 149.55 wind 3.0 90 < th dose independent rect. 3 6
745 149.68 wind 9.0 90 < th dose dependent rect. 3 18
770 150.01 atmosphere 995.0 10 > th dose independent rect. 3 20
801 150.34 atmosphere 1015.0 270 < th dose independent rect. 11 10
807 150.38 atmosphere 995.0 270 > th dose dependent rect. 22 2
942 152.04 humidity 50.0 10 > th dose dependent rect. 23 4
958 152.27 atmosphere 995.0 90 > th dose dependent rect. 22 5
959 152.27 wind 5.0 10 < th dose dependent rect. 3 6
999 152.52 wind 1.0 270 > th dose independent rect. 5 21