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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0418900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0362) R2 : 0.000629
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0408 (0.0762) R2dN8 : 0.000812 R2N8 : 0.000629
σ : 0.682
deviance : 213.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.25 0.667 3.28 -0.576 0.067 0.679 1.13 3.51 -0.15 5.33 19.3 2983 -- --
203.53 0.664 3.21 -0.518 0.0688 -0.946 1.28 -- -0.124 5.73 15.4 3187 -- --
204.08 0.665 3.28 -0.605 0.0896 0.593 -- 3.2 -0.165 5.88 19.66 3173 -- --
205.28 0.667 3.21 -0.513 0.126 -0.814 -- -- -0.133 9.18 15.89 3311 -- --
204.45 0.666 3.28 -0.564 -- 0.621 -- 3.22 -0.151 -- 19.49 3131 -- --
208.74 0.677 3.2 -0.287 0.0721 -- 0.918 -- -0.07 5.28 -- -- -- --
210.17 0.679 3.2 -0.284 0.133 -- -- -- -0.0734 8.73 -- -- -- --
206.18 0.669 3.21 -0.51 -- -0.875 -- -- -0.133 -- 15.6 3247 -- --
210.66 0.676 3.19 -- 0.132 -0.614 -- -- -0.0578 9.12 16.3 1940 -- --
211.16 0.679 3.2 -0.284 -- -- -- -- -0.0723 -- -- -- -- --
212.29 0.682 3.19 -- 0.132 -- -- -- -0.0417 8.89 -- -- -- --
211.52 0.677 3.2 -- -- -0.523 -- -- -0.0579 -- 15.1 3203 -- --
213.29 0.682 3.19 -- -- -- -- -- -0.0408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.04 wind 9 90 > th dose independent rect. 16 18
2 193.06 wind 9 90 > th dose dependent rect. 16 18
3 193.18 wind 9 90 > th dose independent rect. 16 10
11 193.21 wind 9 90 > th dose dependent rect. 16 2
12 193.22 wind 9 90 > th dose independent rect. 16 2
14 193.32 wind 9 90 > th dose dependent rect. 16 10
23 193.44 wind 9 90 > th dose independent rect. 16 7
28 193.49 wind 9 90 > th dose dependent rect. 16 7
33 193.59 wind 9 90 > th dose independent rect. 16 5
34 193.62 wind 9 90 > th dose dependent rect. 16 5
48 193.72 radiation 10 4320 < th dose dependent rect. 19 10
69 194.22 wind 9 90 > th dose independent sin 12 NA
70 194.23 wind 9 90 < th dose independent sin 13 NA
79 194.61 wind 7 10 > th dose dependent rect. 18 1
87 195.30 wind 9 90 > th dose dependent sin 12 NA
91 195.46 wind 9 90 > th dose independent rect. 12 22
101 195.57 wind 9 90 > th dose independent rect. 12 14
111 195.63 atmosphere 1000 10 < th dose independent rect. 1 6
113 195.67 wind 9 10 > th dose independent rect. 17 2
124 195.70 temperature 15 14400 > th dose independent rect. 21 4
132 195.75 wind 9 90 > th dose independent rect. 12 11
135 195.76 temperature 15 14400 > th dose independent rect. 24 1
140 195.81 radiation 1 14400 > th dose independent rect. 9 1
141 195.83 wind 9 90 > th dose independent rect. 12 6
144 195.86 temperature 15 14400 < th dose independent rect. 21 6
169 195.97 temperature 15 14400 < th dose independent rect. 23 2
181 196.04 radiation 1 14400 < th dose independent rect. 9 1
190 196.12 temperature 15 14400 > th dose independent rect. 8 3
194 196.12 temperature 15 14400 < th dose independent rect. 21 16
215 196.23 atmosphere 1000 10 < th dose dependent rect. 1 6
231 196.30 temperature 15 14400 > th dose independent rect. 6 6
236 196.32 temperature 15 14400 < th dose independent rect. 9 1
237 196.32 temperature 15 14400 > th dose independent rect. 9 19
240 196.33 radiation 10 4320 < th dose dependent rect. 24 5
245 196.35 temperature 15 14400 > th dose independent rect. 9 1
259 196.36 wind 7 10 > th dose dependent rect. 16 19
261 196.37 temperature 15 14400 < th dose independent rect. 24 13
286 196.43 temperature 15 14400 > th dose independent rect. 2 1
293 196.44 temperature 15 14400 < th dose independent rect. 9 19
308 196.47 temperature 15 14400 < th dose independent sin 3 NA
309 196.47 temperature 15 14400 < th dose independent rect. 4 9
377 196.58 temperature 15 14400 < th dose independent rect. 4 23
394 196.62 temperature 15 14400 < th dose independent no NA NA
409 196.64 radiation 40 43200 < th dose dependent rect. 19 10
416 196.65 temperature 15 14400 < th dose independent rect. 24 23
422 196.67 temperature 15 14400 < th dose independent rect. 21 10
427 196.68 temperature 15 14400 > th dose independent rect. 21 16
429 196.68 temperature 15 14400 < th dose independent rect. 2 23
440 196.71 temperature 15 14400 < th dose independent sin 12 NA
466 196.73 wind 9 90 > th dose dependent rect. 12 22
480 196.75 radiation 10 4320 < th dose dependent rect. 3 2
602 196.92 temperature 15 14400 > th dose independent sin 1 NA
608 196.92 wind 9 90 > th dose dependent rect. 12 14
625 196.94 temperature 15 14400 > th dose independent sin 15 NA
653 196.98 temperature 15 14400 > th dose independent no NA NA
659 196.98 temperature 15 14400 > th dose independent rect. 24 23
692 197.03 temperature 15 14400 > th dose independent rect. 2 23
693 197.03 wind 7 10 > th dose dependent rect. 9 1
704 197.04 wind 9 90 > th dose dependent rect. 12 6
705 197.04 wind 9 90 > th dose dependent rect. 12 11
756 197.11 radiation 1 43200 < th dose dependent rect. 10 1
761 197.12 temperature 15 14400 > th dose independent rect. 24 13
786 197.17 wind 9 4320 > th dose independent rect. 17 1
803 197.18 atmosphere 1000 270 < th dose dependent rect. 1 1
816 197.21 wind 9 90 > th dose dependent rect. 12 9
843 197.26 radiation 10 43200 < th dose independent rect. 19 10
859 197.30 humidity 60 43200 < th dose independent sin 9 NA
872 197.33 atmosphere 1000 270 < th dose independent rect. 1 1
875 197.33 humidity 60 43200 < th dose independent rect. 17 19
888 197.36 humidity 60 43200 > th dose independent rect. 18 18
919 197.42 temperature 15 14400 < th dose independent rect. 5 2
937 197.47 radiation 30 43200 > th dose dependent rect. 15 2
954 197.48 wind 7 4320 > th dose dependent rect. 17 1
985 197.53 radiation 10 43200 < th dose independent rect. 24 5
988 197.53 radiation 10 43200 < th dose independent rect. 17 12