Os10g0418300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0418300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.58 | 0.649 | 5.81 | -0.0135 | 0.358 | -0.99 | -0.125 | -0.0885 | 0.0365 | 17.2 | 21.6 | 1973 | -- | -- |
| 190.29 | 0.642 | 5.81 | -0.023 | 0.345 | -0.957 | -0.164 | -- | 0.0368 | 16.8 | 21.71 | 1717 | -- | -- |
| 190.62 | 0.643 | 5.81 | -0.014 | 0.357 | -0.991 | -- | -0.0944 | 0.0362 | 17.3 | 21.57 | 1976 | -- | -- |
| 190.36 | 0.643 | 5.81 | -0.0191 | 0.347 | -0.958 | -- | -- | 0.0386 | 16.8 | 21.71 | 1717 | -- | -- |
| 196.39 | 0.653 | 5.81 | -0.0275 | -- | -0.972 | -- | -0.0213 | 0.0333 | -- | 21.8 | 1557 | -- | -- |
| 219.29 | 0.694 | 5.87 | -0.438 | 0.34 | -- | -0.239 | -- | -0.255 | 16.7 | -- | -- | -- | -- |
| 219.44 | 0.694 | 5.87 | -0.439 | 0.338 | -- | -- | -- | -0.256 | 16.7 | -- | -- | -- | -- |
| 196.36 | 0.653 | 5.81 | -0.0544 | -- | -0.96 | -- | -- | 0.027 | -- | 21.77 | 1503 | -- | -- |
| 190.37 | 0.643 | 5.81 | -- | 0.347 | -0.964 | -- | -- | 0.0423 | 16.8 | 21.72 | 1720 | -- | -- |
| 225.52 | 0.702 | 5.87 | -0.452 | -- | -- | -- | -- | -0.265 | -- | -- | -- | -- | -- |
| 224.52 | 0.701 | 5.86 | -- | 0.346 | -- | -- | -- | -0.208 | 16.7 | -- | -- | -- | -- |
| 196.43 | 0.653 | 5.8 | -- | -- | -0.977 | -- | -- | 0.0373 | -- | 21.74 | 1505 | -- | -- |
| 230.91 | 0.709 | 5.86 | -- | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.79 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 187.88 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 3 | 188.98 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 4 | 189.03 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 5 | 189.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 6 | 189.04 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 12 | 189.34 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 39 | 190.36 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 47 | 190.53 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 52 | 190.63 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 58 | 190.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 63 | 190.83 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 68 | 190.95 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 73 | 191.02 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 75 | 191.03 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 95 | 191.25 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 99 | 191.29 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 100 | 191.29 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 109 | 191.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 110 | 191.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 113 | 191.41 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 118 | 191.45 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 126 | 191.47 | temperature | 25.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 130 | 191.49 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 142 | 191.58 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 1 | NA |
| 147 | 191.60 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 161 | 191.68 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 181 | 191.77 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 213 | 191.85 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 214 | 191.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 218 | 191.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 222 | 191.88 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 223 | 191.88 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 230 | 191.91 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 237 | 191.95 | temperature | 25.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 309 | 192.18 | temperature | 25.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 435 | 192.57 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 451 | 192.61 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 473 | 192.65 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 489 | 192.68 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 522 | 192.77 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 524 | 192.77 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 580 | 192.92 | temperature | 25.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 590 | 192.93 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 593 | 192.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 700 | 193.15 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 728 | 193.20 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 19 | 22 |
| 824 | 193.36 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 835 | 193.37 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 853 | 193.40 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 24 | 17 |
| 859 | 193.41 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 872 | 193.43 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 906 | 193.49 | temperature | 20.0 | 14400 | > th | dose dependent | no | NA | NA |
| 909 | 193.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 910 | 193.50 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 4 |