Os10g0412700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thaumatin, pathogenesis-related family protein.
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Os10g0412700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thaumatin, pathogenesis-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.75 | 0.545 | 3.25 | 0.701 | 0.0856 | 1.25 | -0.977 | 2.01 | -0.0349 | 10.3 | 47.52 | 1695 | -- | -- |
| 140.42 | 0.552 | 3.24 | 0.893 | 0.0742 | 1.41 | -1.07 | -- | -0.00358 | 10.8 | 43 | 1701 | -- | -- |
| 138.37 | 0.548 | 3.25 | 0.655 | 0.119 | 1.2 | -- | 2.13 | -0.0523 | 8.18 | 46.92 | 1659 | -- | -- |
| 145 | 0.561 | 3.24 | 0.867 | 0.0818 | 1.41 | -- | -- | -0.00383 | 11.2 | 44.78 | 1744 | -- | -- |
| 139.01 | 0.549 | 3.25 | 0.653 | -- | 1.24 | -- | 2.13 | -0.0397 | -- | 46 | 1712 | -- | -- |
| 186 | 0.639 | 3.25 | 0.862 | 0.161 | -- | -0.942 | -- | -0.0542 | 9.06 | -- | -- | -- | -- |
| 187.7 | 0.642 | 3.25 | 0.823 | 0.238 | -- | -- | -- | -0.0591 | 6.32 | -- | -- | -- | -- |
| 145.25 | 0.561 | 3.24 | 0.864 | -- | 1.43 | -- | -- | 0.00235 | -- | 44.47 | 1786 | -- | -- |
| 163.51 | 0.596 | 3.25 | -- | 0.125 | 1.5 | -- | -- | -0.0174 | 15.3 | 64.62 | 1799 | -- | -- |
| 190.65 | 0.645 | 3.26 | 0.829 | -- | -- | -- | -- | -0.0539 | -- | -- | -- | -- | -- |
| 205.55 | 0.671 | 3.27 | -- | 0.25 | -- | -- | -- | -0.151 | 6.14 | -- | -- | -- | -- |
| 163.56 | 0.596 | 3.23 | -- | -- | 1.74 | -- | -- | 0.073 | -- | 74.76 | 1887 | -- | -- |
| 208.79 | 0.674 | 3.28 | -- | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.41 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 5 | 132.69 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 17 | 133.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 18 | 133.60 | humidity | 90 | 14400 | < th | dose independent | sin | 17 | NA |
| 24 | 133.75 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 19 |
| 35 | 134.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 42 | 134.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 68 | 134.91 | humidity | 90 | 14400 | > th | dose independent | sin | 17 | NA |
| 70 | 134.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 91 | 135.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 1 | 22 |
| 106 | 135.37 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 114 | 135.44 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 17 |
| 126 | 135.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 206 | 136.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 210 | 136.15 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 213 | 136.16 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 258 | 136.50 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 264 | 136.55 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 293 | 136.76 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 13 |
| 299 | 136.81 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 15 |
| 346 | 137.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 410 | 137.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 412 | 137.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 554 | 138.05 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 629 | 138.42 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 632 | 138.44 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 637 | 138.45 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 640 | 138.48 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 654 | 138.55 | humidity | 50 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 658 | 138.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 660 | 138.57 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 665 | 138.58 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 669 | 138.60 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 684 | 138.65 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 711 | 138.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 887 | 139.30 | humidity | 80 | 14400 | > th | dose dependent | rect. | 16 | 21 |
| 987 | 139.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 15 |