FiT-DB / Search/ Help/ Sample detail

Os10g0412000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0162) R2 : 0.0543
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.174 (0.034) R2dN8 : 0.0701 R2N8 : 0.0543
σ : 0.304
deviance : 42.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.91 0.22 11.3 0.341 0.395 0.302 -0.0687 -0.44 0.251 3.24 89.11 272 -- --
22.17 0.219 11.3 0.318 0.387 0.29 -0.223 -- 0.238 3.3 88.15 265 -- --
21.92 0.218 11.3 0.343 0.395 0.299 -- -0.474 0.251 3.22 89.02 269 -- --
22.33 0.22 11.3 0.326 0.377 0.266 -- -- 0.245 3.3 87.3 231 -- --
26.17 0.238 11.3 0.323 -- 0.509 -- -0.325 0.291 -- 74 212 -- --
23.85 0.229 11.3 0.356 0.517 -- -0.174 -- 0.201 3.74 -- -- -- --
23.94 0.229 11.3 0.359 0.515 -- -- -- 0.202 3.69 -- -- -- --
25.93 0.237 11.3 0.351 -- 0.474 -- -- 0.257 -- 73.06 183 -- --
25.05 0.233 11.3 -- 0.369 0.313 -- -- 0.217 3.07 87.36 270 -- --
38.65 0.29 11.3 0.38 -- -- -- -- 0.216 -- -- -- -- --
27.33 0.245 11.3 -- 0.522 -- -- -- 0.162 3.69 -- -- -- --
28.96 0.251 11.3 -- -- 0.49 -- -- 0.229 -- 78.62 164 -- --
42.46 0.304 11.3 -- -- -- -- -- 0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.49 temperature 25 270 > th dose independent rect. 17 14
4 20.62 temperature 25 270 > th dose independent sin 13 NA
8 20.68 temperature 25 720 > th dose independent rect. 15 10
12 20.73 temperature 25 90 > th dose independent rect. 17 10
67 21.04 temperature 25 720 < th dose independent sin 14 NA
69 21.04 temperature 25 720 < th dose independent rect. 15 13
79 21.08 temperature 25 720 < th dose independent rect. 16 11
81 21.09 radiation 1 720 > th dose independent rect. 15 3
101 21.15 temperature 25 270 < th dose independent sin 11 NA
105 21.15 temperature 25 720 > th dose dependent rect. 15 16
113 21.18 radiation 1 720 < th dose independent rect. 14 10
115 21.18 temperature 25 720 > th dose dependent rect. 15 12
133 21.22 temperature 25 720 > th dose dependent sin 13 NA
134 21.23 radiation 1 720 > th dose independent rect. 17 1
137 21.23 temperature 25 270 > th dose dependent rect. 21 10
147 21.27 temperature 25 270 < th dose independent rect. 21 10
169 21.30 radiation 1 720 > th dose independent rect. 9 9
176 21.32 radiation 1 720 < th dose dependent rect. 14 10
180 21.33 radiation 1 720 < th dose independent rect. 9 15
205 21.37 temperature 25 270 < th dose independent rect. 19 12
221 21.39 temperature 25 720 > th dose dependent rect. 22 1
222 21.39 temperature 20 90 > th dose dependent rect. 17 10
241 21.43 temperature 25 10 > th dose independent rect. 18 8
252 21.43 radiation 1 720 < th dose dependent rect. 9 15
263 21.45 atmosphere 1005 90 > th dose independent rect. 17 10
287 21.48 temperature 25 720 < th dose independent rect. 19 6
306 21.51 radiation 1 720 < th dose independent sin 18 NA
318 21.52 radiation 1 720 > th dose independent rect. 13 5
326 21.53 radiation 1 720 > th dose independent sin 16 NA
329 21.53 atmosphere 1005 30 > th dose independent rect. 22 6
378 21.57 radiation 1 270 < th dose dependent rect. 4 14
381 21.58 radiation 1 720 > th dose independent rect. 11 7
389 21.59 atmosphere 1005 270 > th dose independent rect. 22 3
420 21.60 radiation 1 720 < th dose dependent sin 19 NA
441 21.61 radiation 1 270 < th dose independent rect. 3 15
446 21.61 temperature 25 720 > th dose dependent rect. 20 5
467 21.64 temperature 25 270 > th dose independent rect. 22 2
484 21.65 atmosphere 1005 270 > th dose independent rect. 20 7
493 21.65 radiation 30 1440 < th dose dependent rect. 23 6
497 21.66 radiation 1 270 > th dose independent sin 2 NA
498 21.66 temperature 25 720 > th dose independent rect. 17 1
547 21.68 humidity 90 270 < th dose independent rect. 8 17
587 21.71 radiation 1 1440 > th dose independent rect. 12 1
633 21.73 wind 5 90 < th dose independent rect. 11 16
658 21.74 radiation 40 1440 < th dose dependent rect. 19 10
671 21.75 humidity 60 90 > th dose independent rect. 3 14
672 21.75 humidity 90 270 > th dose independent rect. 17 14
686 21.75 humidity 50 10 > th dose dependent rect. 16 17
697 21.76 humidity 90 270 > th dose independent rect. 11 20
704 21.76 humidity 50 30 > th dose dependent rect. 14 19
724 21.77 humidity 90 270 > th dose dependent rect. 3 23
732 21.78 radiation 1 270 < th dose dependent sin 1 NA
746 21.79 radiation 1 720 < th dose independent rect. 1 23
760 21.80 radiation 1 1440 > th dose independent rect. 10 3
762 21.80 radiation 10 1440 < th dose independent rect. 23 6
772 21.80 radiation 1 720 < th dose independent rect. 3 21
817 21.83 humidity 90 270 < th dose independent rect. 22 14
821 21.83 radiation 1 720 > th dose independent rect. 13 23
822 21.83 radiation 1 720 < th dose independent rect. 3 23
847 21.85 radiation 1 270 < th dose independent sin 1 NA
857 21.85 humidity 90 270 < th dose independent rect. 20 16
879 21.85 radiation 1 720 < th dose dependent rect. 9 9
889 21.86 humidity 90 270 > th dose independent rect. 20 11
897 21.86 atmosphere 1015 270 < th dose dependent rect. 8 5
906 21.86 humidity 90 270 > th dose dependent rect. 10 21
914 21.87 radiation 1 270 > th dose independent rect. 17 21
923 21.87 humidity 90 270 > th dose dependent rect. 16 17
925 21.87 humidity 50 30 > th dose dependent rect. 14 21
944 21.88 humidity 90 90 < th dose independent rect. 9 21
947 21.88 humidity 90 90 < th dose independent rect. 8 23
949 21.88 radiation 1 720 < th dose dependent rect. 13 5
967 21.89 humidity 90 270 > th dose independent sin 9 NA
994 21.89 humidity 90 270 > th dose dependent rect. 17 14