Os10g0411700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein S28.
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Os10g0411700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein S28.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.41 | 0.411 | 15 | 0.475 | 1.04 | 0.593 | 0.765 | -1.16 | 0.18 | 18 | 20.6 | 2745 | -- | -- |
| 78.17 | 0.412 | 14.9 | 0.615 | 1.04 | 0.97 | 0.64 | -- | 0.222 | 18 | 19.07 | 2725 | -- | -- |
| 77.83 | 0.411 | 15 | 0.463 | 1.05 | 0.595 | -- | -1.2 | 0.18 | 18 | 20.5 | 2724 | -- | -- |
| 79.72 | 0.416 | 14.9 | 0.625 | 1.05 | 0.966 | -- | -- | 0.241 | 18 | 19.1 | 2725 | -- | -- |
| 133.82 | 0.539 | 15 | 0.469 | -- | 0.638 | -- | -1.02 | 0.163 | -- | 20.5 | 2131 | -- | -- |
| 91.46 | 0.448 | 14.9 | 1.12 | 1.02 | -- | 0.946 | -- | 0.438 | 18.1 | -- | -- | -- | -- |
| 93.66 | 0.453 | 14.9 | 1.11 | 1.02 | -- | -- | -- | 0.442 | 18.1 | -- | -- | -- | -- |
| 131.9 | 0.535 | 14.9 | 0.821 | -- | 0.718 | -- | -- | 0.188 | -- | 20.5 | 571 | -- | -- |
| 83.84 | 0.426 | 15 | -- | 1.02 | 1.09 | -- | -- | 0.091 | 18.1 | 18.8 | 21598 | -- | -- |
| 147.85 | 0.568 | 14.9 | 1.08 | -- | -- | -- | -- | 0.419 | -- | -- | -- | -- | -- |
| 125.94 | 0.525 | 14.9 | -- | 1.01 | -- | -- | -- | 0.318 | 18.2 | -- | -- | -- | -- |
| 138.26 | 0.548 | 15 | -- | -- | 1.12 | -- | -- | 0.087 | -- | 15.4 | 47520 | -- | -- |
| 178.48 | 0.624 | 14.9 | -- | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.41 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 2 | 73.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 7 | 73.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 19 | 74.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 83 | 75.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 84 | 75.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 85 | 75.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 88 | 75.67 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 90 | 75.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 91 | 75.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 93 | 75.74 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 128 | 76.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 143 | 76.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 150 | 76.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 163 | 76.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 173 | 76.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 177 | 76.28 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 179 | 76.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 189 | 76.31 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 213 | 76.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 262 | 76.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 276 | 76.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 304 | 76.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 307 | 76.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 354 | 76.77 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 366 | 76.81 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 385 | 76.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 423 | 76.93 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 519 | 77.13 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 536 | 77.17 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 549 | 77.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 560 | 77.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 562 | 77.22 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 606 | 77.28 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 753 | 77.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 762 | 77.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 785 | 77.60 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 846 | 77.71 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 916 | 77.81 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 942 | 77.85 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 997 | 77.95 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |