Os10g0407000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os10g0407000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.23 | 0.463 | 12.8 | -1.06 | 0.536 | -0.737 | -0.0638 | 2.53 | -0.125 | 8.72 | 24.7 | 11 | -- | -- |
| 106.93 | 0.485 | 12.8 | -0.667 | 0.513 | -1.08 | -0.61 | -- | -0.00106 | 9.1 | 22.46 | 23 | -- | -- |
| 97.24 | 0.459 | 12.8 | -1.07 | 0.536 | -0.736 | -- | 2.55 | -0.126 | 8.71 | 24.7 | 11 | -- | -- |
| 107.9 | 0.484 | 12.8 | -0.695 | 0.528 | -1.11 | -- | -- | -0.00757 | 8.65 | 22.5 | 11 | -- | -- |
| 112.92 | 0.498 | 12.8 | -1.08 | -- | -0.918 | -- | 2.42 | -0.146 | -- | 24.6 | 6 | -- | -- |
| 120.13 | 0.514 | 12.7 | -0.455 | 0.595 | -- | -0.774 | -- | 0.125 | 9.87 | -- | -- | -- | -- |
| 122.28 | 0.518 | 12.7 | -0.487 | 0.605 | -- | -- | -- | 0.122 | 9.53 | -- | -- | -- | -- |
| 122.57 | 0.516 | 12.8 | -0.738 | -- | -1.22 | -- | -- | -0.041 | -- | 23.25 | 2 | -- | -- |
| 119.88 | 0.51 | 12.8 | -- | 0.539 | -0.85 | -- | -- | 0.0797 | 8.84 | 22.52 | 10 | -- | -- |
| 143.88 | 0.56 | 12.8 | -0.491 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 128.52 | 0.53 | 12.7 | -- | 0.606 | -- | -- | -- | 0.176 | 9.59 | -- | -- | -- | -- |
| 135.67 | 0.544 | 12.8 | -- | -- | -1.02 | -- | -- | 0.0775 | -- | 22.7 | 2 | -- | -- |
| 150.24 | 0.572 | 12.7 | -- | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.26 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 3 | 88.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 10 | 89.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 17 | 90.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 19 | 90.37 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 4 |
| 27 | 90.73 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 17 |
| 31 | 90.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 33 | 90.96 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 10 |
| 35 | 90.98 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 41 | 91.15 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 42 | 91.15 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 8 |
| 44 | 91.17 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 50 | 91.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 53 | 91.39 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 54 | 91.39 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 113 | 92.44 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 114 | 92.44 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 14 |
| 117 | 92.47 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 207 | 93.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 258 | 93.91 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 325 | 94.49 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 15 |
| 376 | 94.84 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 377 | 94.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 383 | 94.90 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 21 |
| 406 | 95.00 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 421 | 95.02 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 21 |
| 540 | 95.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 543 | 95.88 | humidity | 90 | 720 | < th | dose independent | rect. | 16 | 5 |
| 559 | 95.97 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 18 |
| 571 | 96.01 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 3 |
| 619 | 96.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 660 | 96.39 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 669 | 96.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 672 | 96.45 | humidity | 90 | 270 | > th | dose independent | rect. | 3 | 21 |
| 751 | 96.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 756 | 96.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 832 | 97.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 855 | 97.15 | humidity | 90 | 720 | > th | dose independent | rect. | 4 | 19 |
| 864 | 97.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 866 | 97.18 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 876 | 97.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 877 | 97.23 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 888 | 97.26 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 898 | 97.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 908 | 97.36 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 18 |
| 916 | 97.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 922 | 97.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 950 | 97.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 955 | 97.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 968 | 97.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 985 | 97.66 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 22 |
| 999 | 97.72 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |