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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0405500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0476) R2 : 0.0771
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.69 (0.278) R2dE : 0.0771 R2E : 0.0771
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000407 (0.102) R2dN8 : 3.18e-08 R2N8 : 1.93e-05
σ : 0.891
deviance : 365.88
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.57
memory length : 2540
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.87 0.888 3.45 0.54 0.0944 3.19 -0.857 3.47 0.0971 15.6 18.6 3793 -- --
360.69 0.885 3.38 0.444 0.0617 1.92 -0.698 -- 0.0743 14.7 18.8 2558 -- --
358.78 0.882 3.46 0.515 0.101 3.41 -- 3.82 0.0783 17.2 18.26 3788 -- --
361.89 0.886 3.39 0.43 0.0799 1.95 -- -- 0.0787 16.8 18.8 2549 -- --
359.19 0.883 3.47 0.568 -- 3.83 -- 4.56 0.0987 -- 18.11 3793 -- --
390.25 0.926 3.43 -0.147 0.154 -- -0.992 -- -0.126 15.5 -- -- -- --
393.3 0.929 3.44 -0.165 0.151 -- -- -- -0.132 15.8 -- -- -- --
362.2 0.886 3.39 0.432 -- 1.96 -- -- 0.0771 -- 18.8 2558 -- --
365.58 0.891 3.4 -- 0.0778 1.7 -- -- 0.0128 15.7 18.5 2538 -- --
394.56 0.928 3.44 -0.171 -- -- -- -- -0.136 -- -- -- -- --
394.02 0.929 3.43 -- 0.154 -- -- -- -0.114 15.8 -- -- -- --
365.88 0.891 3.4 -- -- 1.69 -- -- -0.000407 -- 18.57 2540 -- --
395.33 0.928 3.43 -- -- -- -- -- -0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 354.70 temperature 25 720 < th dose dependent rect. 7 3
2 354.87 temperature 20 720 < th dose dependent rect. 3 5
3 354.87 temperature 20 720 < th dose dependent rect. 23 10
7 355.01 temperature 20 720 < th dose dependent rect. 5 2
19 355.38 temperature 30 270 < th dose dependent rect. 6 10
37 356.03 wind 9 43200 > th dose dependent rect. 21 4
41 356.18 radiation 1 4320 < th dose dependent rect. 7 2
44 356.20 temperature 20 720 < th dose dependent sin 8 NA
48 356.27 wind 7 43200 > th dose independent rect. 23 3
52 356.32 wind 7 43200 < th dose independent rect. 23 3
65 356.76 radiation 1 4320 > th dose independent rect. 7 2
70 356.87 radiation 1 4320 < th dose independent rect. 7 2
104 357.32 humidity 60 43200 > th dose independent rect. 10 2
108 357.40 radiation 30 4320 < th dose independent rect. 7 1
111 357.54 radiation 10 43200 > th dose independent rect. 17 1
134 357.68 wind 9 43200 > th dose dependent rect. 13 19
135 357.70 radiation 40 43200 < th dose independent rect. 4 5
137 357.74 radiation 40 43200 < th dose independent rect. 1 8
138 357.74 radiation 40 43200 < th dose independent rect. 18 15
140 357.75 radiation 40 43200 < th dose independent rect. 20 13
146 357.79 radiation 40 43200 < th dose independent rect. 22 11
147 357.79 humidity 70 43200 < th dose dependent rect. 10 1
168 358.00 wind 9 43200 > th dose dependent rect. 10 10
176 358.13 humidity 60 43200 > th dose independent rect. 7 6
196 358.32 wind 9 43200 > th dose dependent rect. 17 9
204 358.39 wind 9 43200 > th dose dependent rect. 17 7
209 358.45 wind 9 43200 > th dose dependent sin 18 NA
214 358.48 temperature 15 270 > th dose dependent rect. 1 19
218 358.54 wind 9 43200 > th dose independent rect. 3 16
223 358.57 radiation 30 4320 < th dose independent rect. 5 3
224 358.57 radiation 30 4320 < th dose independent rect. 2 6
234 358.63 radiation 30 4320 < th dose independent rect. 24 8
237 358.63 radiation 30 4320 < th dose independent rect. 17 15
239 358.65 wind 9 43200 > th dose independent rect. 23 20
250 358.69 radiation 30 4320 < th dose independent rect. 19 13
257 358.70 wind 9 43200 > th dose independent rect. 13 21
267 358.73 temperature 10 720 > th dose dependent rect. 2 10
280 358.83 wind 9 43200 > th dose dependent sin 14 NA
283 358.84 wind 9 43200 > th dose dependent rect. 16 15
291 358.90 wind 9 43200 < th dose independent rect. 13 21
292 358.91 wind 7 43200 < th dose independent rect. 7 1
306 358.95 wind 9 43200 > th dose independent rect. 17 9
310 358.96 wind 7 43200 > th dose independent rect. 7 2
311 358.96 humidity 50 43200 > th dose independent rect. 15 3
316 358.96 wind 9 43200 > th dose dependent rect. 10 13
321 358.97 wind 9 43200 > th dose independent rect. 16 16
323 358.98 wind 9 43200 > th dose independent rect. 17 7
325 358.98 wind 9 43200 > th dose dependent rect. 10 15
327 358.99 wind 9 43200 < th dose independent rect. 16 16
340 359.02 wind 9 43200 > th dose dependent rect. 17 13
342 359.04 radiation 10 14400 < th dose independent rect. 13 1
349 359.05 wind 9 43200 < th dose independent rect. 3 16
362 359.09 radiation 10 43200 < th dose independent rect. 17 1
369 359.10 wind 9 43200 > th dose independent rect. 15 23
383 359.14 radiation 20 4320 > th dose dependent rect. 7 1
387 359.15 wind 9 43200 < th dose independent rect. 18 6
388 359.15 wind 9 43200 > th dose independent rect. 17 14
389 359.15 wind 9 43200 > th dose independent rect. 4 20
392 359.15 wind 9 43200 > th dose dependent rect. 10 6
393 359.16 wind 9 43200 > th dose independent sin 1 NA
394 359.16 temperature 20 720 < th dose independent rect. 5 6
398 359.17 wind 9 43200 < th dose independent rect. 23 20
407 359.18 wind 7 43200 > th dose dependent rect. 21 11
408 359.18 radiation 10 43200 > th dose dependent rect. 17 13
429 359.22 temperature 10 720 > th dose dependent rect. 23 14
433 359.24 wind 9 43200 < th dose independent rect. 17 14
447 359.26 wind 9 43200 > th dose dependent rect. 18 1
458 359.28 wind 9 43200 > th dose independent no NA NA
479 359.31 wind 9 43200 < th dose independent rect. 17 9
524 359.38 wind 9 43200 < th dose independent rect. 15 23
526 359.39 wind 9 43200 > th dose independent rect. 17 23
559 359.47 humidity 60 43200 > th dose independent rect. 17 20
579 359.52 wind 9 43200 < th dose independent rect. 3 21
583 359.53 radiation 10 43200 > th dose dependent rect. 17 1
623 359.58 radiation 30 43200 > th dose dependent rect. 16 16
632 359.60 wind 7 43200 > th dose dependent rect. 19 7
709 359.71 wind 9 43200 < th dose independent sin 1 NA
710 359.71 wind 9 43200 < th dose independent no NA NA
737 359.75 wind 9 43200 > th dose independent sin 13 NA
745 359.75 wind 9 43200 < th dose independent rect. 6 23
757 359.78 wind 9 43200 > th dose independent rect. 7 8
771 359.80 wind 9 43200 > th dose independent rect. 8 6
772 359.80 humidity 60 43200 > th dose independent rect. 22 15
806 359.84 humidity 50 43200 < th dose independent rect. 15 3
819 359.85 temperature 20 720 > th dose independent rect. 5 6
833 359.86 radiation 30 43200 > th dose dependent rect. 16 1
881 359.93 radiation 40 43200 > th dose dependent rect. 7 2
918 359.96 wind 9 43200 < th dose independent sin 12 NA
923 359.97 radiation 10 43200 < th dose independent rect. 17 7
930 360.00 radiation 10 43200 < th dose independent rect. 17 4
981 360.09 wind 7 43200 > th dose independent rect. 22 11