Os10g0405100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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Os10g0405100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.99 | 0.329 | 11 | 0.871 | 1.19 | 1.54 | -0.739 | 0.887 | 0.595 | 21.6 | 19.3 | 7819 | -- | -- |
| 49.65 | 0.328 | 11 | 0.921 | 1.18 | 1.23 | -0.714 | -- | 0.602 | 21.5 | 19.4 | 7733 | -- | -- |
| 50.87 | 0.332 | 11 | 0.88 | 1.19 | 1.59 | -- | 0.942 | 0.61 | 21.5 | 19.08 | 7796 | -- | -- |
| 51.47 | 0.334 | 11 | 0.872 | 1.2 | 1.26 | -- | -- | 0.595 | 21.5 | 19.3 | 7899 | -- | -- |
| 134.39 | 0.54 | 10.9 | 0.787 | -- | 2 | -- | 1.66 | 0.577 | -- | 18.8 | 7941 | -- | -- |
| 70.94 | 0.395 | 10.9 | 1.72 | 1.21 | -- | -0.721 | -- | 0.92 | 21.6 | -- | -- | -- | -- |
| 72.88 | 0.4 | 10.9 | 1.75 | 1.22 | -- | -- | -- | 0.921 | 21.6 | -- | -- | -- | -- |
| 135.84 | 0.543 | 11 | 0.835 | -- | 1.4 | -- | -- | 0.555 | -- | 19.3 | 7963 | -- | -- |
| 55.2 | 0.346 | 11.1 | -- | 1.21 | 1.67 | -- | -- | 0.392 | 21.5 | 17.12 | 47520 | -- | -- |
| 160.65 | 0.592 | 10.9 | 1.76 | -- | -- | -- | -- | 0.919 | -- | -- | -- | -- | -- |
| 153.35 | 0.579 | 11 | -- | 1.22 | -- | -- | -- | 0.727 | 21.7 | -- | -- | -- | -- |
| 139.88 | 0.551 | 11 | -- | -- | 1.56 | -- | -- | 0.393 | -- | 18.2 | 28275 | -- | -- |
| 242.06 | 0.726 | 11 | -- | -- | -- | -- | -- | 0.724 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.99 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 2 | 47.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 3 | 47.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 4 | 47.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 6 | 47.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 10 | 47.61 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 11 | 47.64 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 12 | 47.67 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 13 | 47.69 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 14 | 47.71 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 21 | 47.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 22 | 47.95 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 23 | 47.95 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 26 | 48.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 4 |
| 28 | 48.03 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 30 | 48.05 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 33 | 48.06 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 42 | 48.11 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 47 | 48.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 48 | 48.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 57 | 48.26 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 58 | 48.26 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 62 | 48.28 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 67 | 48.31 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 75 | 48.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 97 | 48.45 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 118 | 48.59 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 150 | 48.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 171 | 48.86 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 173 | 48.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 177 | 48.89 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 180 | 48.90 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 185 | 48.92 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 188 | 48.94 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 194 | 48.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 203 | 49.00 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 237 | 49.05 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 242 | 49.06 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 244 | 49.06 | wind | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 255 | 49.08 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 259 | 49.09 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 273 | 49.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 326 | 49.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 371 | 49.25 | humidity | 60 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 415 | 49.29 | radiation | 20 | 43200 | < th | dose independent | sin | 3 | NA |
| 425 | 49.30 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 494 | 49.34 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 534 | 49.37 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 592 | 49.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 641 | 49.43 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 646 | 49.44 | radiation | 20 | 43200 | < th | dose independent | no | NA | NA |
| 648 | 49.44 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 777 | 49.46 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 789 | 49.47 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 864 | 49.52 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 871 | 49.52 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |