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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0402400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.05 (0.0279) R2 : 0.184
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.666 (0.0713) R2dC : 0.157 R2C : 0.145
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.239 (0.0586) R2dN8 : 0.0383 R2N8 : 0.0266
σ : 0.525
deviance : 126.2
__
_____
C
peak time of C : 19.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.41 0.496 5.09 -0.713 0.41 0.532 0.212 -1.35 0.0393 21.3 40.19 734 -- --
113.12 0.495 5.07 -0.567 0.376 0.472 -0.065 -- 0.0943 21 42.88 812 -- --
111.49 0.492 5.09 -0.708 0.403 0.532 -- -1.23 0.0428 21.2 40.24 750 -- --
113.06 0.495 5.07 -0.583 0.408 0.438 -- -- 0.0986 20.8 42.89 812 -- --
117.89 0.506 5.09 -0.731 -- 0.748 -- -1.16 -0.0101 -- 40.22 799 -- --
118.37 0.51 5.06 -0.547 0.663 -- -0.126 -- 0.178 19.9 -- -- -- --
118.41 0.51 5.06 -0.544 0.662 -- -- -- 0.178 20 -- -- -- --
119.84 0.51 5.07 -0.597 -- 0.672 -- -- 0.0574 -- 42.89 817 -- --
119.88 0.51 5.05 -- 0.426 0.66 -- -- 0.198 20.7 49.66 817 -- --
142.31 0.557 5.04 -0.55 -- -- -- -- 0.169 -- -- -- -- --
126.2 0.525 5.05 -- 0.666 -- -- -- 0.239 19.9 -- -- -- --
127.68 0.526 5.05 -- -- 1.01 -- -- 0.152 -- 49.37 835 -- --
150.3 0.572 5.03 -- -- -- -- -- 0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.00 atmosphere 1000.0 30 > th dose dependent rect. 2 9
5 105.60 wind 7.0 30 < th dose dependent rect. 2 9
8 106.35 wind 3.0 30 < th dose independent rect. 2 9
13 106.70 temperature 10.0 30 > th dose dependent rect. 11 15
15 106.96 atmosphere 1000.0 30 > th dose dependent rect. 2 7
18 107.19 temperature 10.0 30 > th dose dependent rect. 2 9
20 107.39 radiation 40.0 30 < th dose independent rect. 2 9
21 107.52 humidity 60.0 30 > th dose independent rect. 2 9
26 107.80 atmosphere 1000.0 30 > th dose independent rect. 2 9
28 107.83 atmosphere 1015.0 30 < th dose independent rect. 11 15
30 107.97 atmosphere 1000.0 270 > th dose dependent rect. 23 9
39 108.18 temperature 15.0 30 > th dose independent rect. 11 15
57 108.67 precipitation 0.1 30 < th dose independent rect. 2 9
58 108.67 precipitation 0.1 30 < th dose dependent rect. 2 9
59 108.68 wind 3.0 10 < th dose independent rect. 2 18
60 108.69 wind 3.0 10 < th dose independent rect. 2 13
61 108.70 precipitation 0.1 30 < th dose independent rect. 11 15
62 108.70 precipitation 0.1 30 < th dose dependent rect. 11 15
63 108.71 temperature 10.0 1440 > th dose independent rect. 3 9
66 108.71 atmosphere 995.0 1440 > th dose independent rect. 3 9
67 108.71 temperature 10.0 1440 > th dose independent rect. 12 15
71 108.76 wind 3.0 10 < th dose independent rect. 2 20
76 108.85 temperature 10.0 30 > th dose independent rect. 2 9
80 108.85 atmosphere 1015.0 30 < th dose independent rect. 2 9
83 108.86 wind 9.0 30 < th dose independent rect. 11 15
87 108.94 atmosphere 1005.0 30 > th dose independent rect. 2 7
91 108.96 wind 3.0 10 < th dose independent rect. 2 16
93 108.98 wind 5.0 30 < th dose dependent rect. 2 7
95 108.98 wind 5.0 30 < th dose dependent rect. 2 13
106 109.11 wind 5.0 30 < th dose dependent rect. 2 18
117 109.24 wind 5.0 30 < th dose dependent rect. 2 16
130 109.46 wind 1.0 30 > th dose independent rect. 11 15
138 109.54 wind 3.0 30 < th dose independent rect. 2 7
140 109.55 atmosphere 995.0 30 > th dose independent rect. 11 15
143 109.61 humidity 60.0 30 > th dose independent rect. 13 22
149 109.66 humidity 50.0 30 > th dose dependent rect. 2 9
155 109.72 temperature 30.0 30 < th dose independent rect. 2 9
157 109.73 atmosphere 1005.0 270 > th dose independent rect. 23 8
162 109.75 wind 3.0 30 < th dose dependent rect. 2 20
165 109.79 temperature 15.0 270 > th dose dependent rect. 24 8
194 109.98 atmosphere 995.0 30 > th dose dependent rect. 13 22
210 110.09 radiation 40.0 30 < th dose independent rect. 13 22
216 110.12 humidity 90.0 90 < th dose independent rect. 2 5
226 110.16 atmosphere 1010.0 30 < th dose independent rect. 20 6
247 110.27 radiation 40.0 10 < th dose dependent rect. 2 9
266 110.39 radiation 40.0 720 < th dose independent rect. 2 8
269 110.42 atmosphere 1005.0 90 > th dose dependent rect. 2 2
305 110.57 temperature 15.0 30 > th dose independent rect. 9 17
307 110.57 wind 9.0 10 < th dose dependent rect. 13 22
309 110.61 humidity 60.0 30 > th dose independent rect. 2 18
321 110.65 temperature 15.0 30 > th dose dependent rect. 20 6
327 110.67 humidity 50.0 30 > th dose independent rect. 11 15
329 110.68 radiation 40.0 720 < th dose independent rect. 23 15
331 110.70 humidity 50.0 4320 > th dose independent rect. 3 7
332 110.70 atmosphere 1015.0 30 < th dose independent rect. 9 17
335 110.71 atmosphere 1005.0 10 > th dose dependent rect. 2 2
349 110.79 radiation 40.0 720 < th dose independent rect. 16 22
350 110.79 radiation 40.0 720 > th dose independent rect. 11 23
358 110.81 radiation 40.0 720 < th dose independent rect. 2 12
386 110.88 humidity 50.0 30 > th dose dependent rect. 13 22
396 110.92 atmosphere 1005.0 720 > th dose independent rect. 23 1
422 111.02 wind 1.0 30 > th dose dependent rect. 24 13
436 111.06 radiation 30.0 720 > th dose independent rect. 11 1
439 111.07 humidity 90.0 90 < th dose independent rect. 2 3
464 111.16 precipitation 0.1 30 < th dose independent rect. 2 7
466 111.16 precipitation 0.1 30 < th dose dependent rect. 2 7
469 111.17 radiation 40.0 720 < th dose independent rect. 8 16
474 111.19 radiation 1.0 720 > th dose dependent rect. 11 1
475 111.20 temperature 10.0 1440 > th dose independent rect. 3 7
478 111.20 atmosphere 995.0 1440 > th dose independent rect. 3 7
479 111.20 temperature 10.0 1440 > th dose independent rect. 10 17
496 111.24 precipitation 0.1 30 < th dose independent rect. 9 17
497 111.24 atmosphere 1000.0 720 > th dose dependent rect. 23 1
498 111.24 precipitation 0.1 30 < th dose dependent rect. 9 17
502 111.28 wind 1.0 30 > th dose independent rect. 20 10
508 111.30 radiation 30.0 720 > th dose independent rect. 14 22
512 111.31 temperature 10.0 30 > th dose independent rect. 2 7
514 111.31 temperature 30.0 30 < th dose independent rect. 2 7
518 111.31 atmosphere 1015.0 30 < th dose independent rect. 2 7
529 111.36 atmosphere 1005.0 30 > th dose independent rect. 2 5
530 111.36 radiation 40.0 720 < th dose independent rect. 12 22
535 111.37 radiation 40.0 720 < th dose independent rect. 19 19
543 111.39 atmosphere 1010.0 30 < th dose independent rect. 22 4
568 111.46 temperature 25.0 720 < th dose dependent rect. 1 1
572 111.47 wind 9.0 30 < th dose independent rect. 9 17
577 111.47 atmosphere 995.0 30 > th dose dependent rect. 13 20
580 111.48 temperature 15.0 10 > th dose dependent rect. 22 4
587 111.50 radiation 40.0 30 < th dose independent rect. 2 18
604 111.53 radiation 40.0 720 > th dose independent no NA NA
606 111.53 radiation 40.0 720 > th dose independent rect. 8 7
769 111.54 wind 3.0 10 > th dose independent rect. 1 12
775 111.55 radiation 40.0 720 > th dose independent sin 23 NA
776 111.55 wind 5.0 270 < th dose independent rect. 23 9
792 111.57 temperature 20.0 10 < th dose dependent rect. 3 1
808 111.59 radiation 40.0 10 < th dose dependent rect. 2 7
820 111.61 radiation 40.0 720 < th dose independent rect. 6 8
824 111.62 temperature 20.0 270 > th dose independent rect. 1 7
826 111.62 temperature 30.0 30 < th dose independent rect. 13 22
830 111.63 atmosphere 995.0 30 > th dose independent rect. 9 17
852 111.66 radiation 40.0 720 > th dose independent rect. 11 4
855 111.66 radiation 40.0 720 < th dose independent rect. 2 16
882 111.69 temperature 25.0 720 < th dose dependent rect. 5 1
911 111.72 radiation 30.0 270 < th dose independent rect. 23 10
913 111.72 atmosphere 1015.0 270 < th dose independent rect. 8 15
930 111.75 humidity 80.0 10 > th dose independent rect. 2 9
937 111.77 radiation 40.0 720 > th dose independent rect. 14 20
941 111.78 temperature 15.0 30 > th dose independent rect. 20 6
973 111.79 radiation 40.0 720 < th dose independent rect. 2 22
974 111.79 wind 5.0 30 < th dose dependent sin 4 NA
985 111.81 wind 3.0 90 < th dose independent rect. 2 1
987 111.81 radiation 40.0 720 < th dose independent rect. 6 18
990 111.81 radiation 40.0 270 < th dose dependent rect. 12 20
996 111.83 radiation 40.0 720 > th dose independent sin 12 NA
998 111.83 temperature 10.0 1440 > th dose independent rect. 12 2