Os10g0401100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RanBP2-type domain containing protein.
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Os10g0401100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RanBP2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.1 | 0.194 | 2.96 | 0.281 | 0.0738 | -2.41 | -0.068 | 24.9 | -0.03 | 6.42 | 34.1 | 60 | -- | -- |
| 17.98 | 0.199 | 2.98 | 0.0908 | 0.074 | 1.44 | -0.088 | -- | -0.0288 | 6.19 | 34.1 | 60 | -- | -- |
| 16.01 | 0.188 | 2.96 | 0.246 | 0.0671 | -3.42 | -- | 34.6 | -0.0305 | 6.63 | 34.1 | 60 | -- | -- |
| 16.21 | 0.189 | 2.98 | 0.0895 | 0.0691 | 2.18 | -- | -- | -0.0296 | 6.49 | 34.4 | 62 | -- | -- |
| 16.25 | 0.189 | 2.96 | 0.249 | -- | -3.49 | -- | 35 | -0.0293 | -- | 34.1 | 60 | -- | -- |
| 21.03 | 0.215 | 2.99 | 0.104 | 0.0604 | -- | -0.0977 | -- | -0.0353 | 6.89 | -- | -- | -- | -- |
| 21.04 | 0.215 | 2.98 | 0.103 | 0.0608 | -- | -- | -- | -0.0348 | 7.67 | -- | -- | -- | -- |
| 16.46 | 0.19 | 2.99 | 0.0913 | -- | 2.16 | -- | -- | -0.0282 | -- | 34.4 | 62 | -- | -- |
| 16.42 | 0.19 | 2.99 | -- | 0.0704 | 2.19 | -- | -- | -0.0395 | 6.42 | 34.4 | 62 | -- | -- |
| 21.24 | 0.215 | 2.99 | 0.104 | -- | -- | -- | -- | -0.0339 | -- | -- | -- | -- | -- |
| 21.32 | 0.216 | 2.99 | -- | 0.0616 | -- | -- | -- | -0.0463 | 7.56 | -- | -- | -- | -- |
| 16.68 | 0.191 | 2.99 | -- | -- | 2.18 | -- | -- | -0.0383 | -- | 34.4 | 62 | -- | -- |
| 21.52 | 0.217 | 2.99 | -- | -- | -- | -- | -- | -0.0454 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.97 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 2 | 15.97 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 3 | 15.98 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 1 |
| 6 | 15.98 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 29 | 17.47 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 37 | 17.55 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 10 | 4 |
| 101 | 18.26 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 106 | 18.30 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 5 |
| 215 | 18.49 | temperature | 30 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 216 | 18.49 | temperature | 30 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 274 | 18.66 | temperature | 30 | 270 | > th | dose dependent | sin | 7 | NA |
| 302 | 18.75 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 23 | NA |
| 421 | 18.96 | temperature | 30 | 30 | > th | dose independent | rect. | 13 | 1 |
| 488 | 19.09 | temperature | 30 | 90 | > th | dose dependent | sin | 23 | NA |
| 548 | 19.19 | temperature | 30 | 90 | > th | dose dependent | no | NA | NA |
| 702 | 19.22 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 8 |
| 733 | 19.23 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 788 | 19.26 | humidity | 60 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 809 | 19.28 | temperature | 30 | 30 | > th | dose dependent | sin | 17 | NA |
| 840 | 19.29 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 980 | 19.37 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 7 | 2 |