Os10g0397200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Winged helix repressor DNA-binding domain containing protein.
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Os10g0397200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Winged helix repressor DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.21 | 0.164 | 13.1 | 0.311 | 0.191 | -0.757 | 0.0337 | 0.63 | 0.186 | 0.575 | 21.59 | 56 | -- | -- |
| 12.44 | 0.164 | 13.1 | 0.196 | 0.201 | -0.7 | -0.112 | -- | 0.148 | 0.862 | 21.71 | 55 | -- | -- |
| 12.21 | 0.163 | 13.1 | 0.304 | 0.191 | -0.755 | -- | 0.594 | 0.184 | 0.606 | 21.63 | 56 | -- | -- |
| 12.48 | 0.165 | 13.1 | 0.198 | 0.19 | -0.721 | -- | -- | 0.154 | 0.862 | 21.74 | 40 | -- | -- |
| 13.58 | 0.172 | 13.1 | 0.302 | -- | -0.886 | -- | 0.48 | 0.211 | -- | 21.7 | 16 | -- | -- |
| 20.62 | 0.213 | 13.1 | 0.051 | 0.452 | -- | -0.0122 | -- | 0.0355 | 2.05 | -- | -- | -- | -- |
| 20.62 | 0.213 | 13.1 | 0.0514 | 0.452 | -- | -- | -- | 0.0355 | 2.05 | -- | -- | -- | -- |
| 13.84 | 0.173 | 13.1 | 0.239 | -- | -0.885 | -- | -- | 0.186 | -- | 21.59 | 12 | -- | -- |
| 13.46 | 0.171 | 13.1 | -- | 0.218 | -0.651 | -- | -- | 0.12 | 1.06 | 21.96 | 40 | -- | -- |
| 32.87 | 0.268 | 13.1 | 0.0702 | -- | -- | -- | -- | 0.0462 | -- | -- | -- | -- | -- |
| 20.69 | 0.213 | 13.1 | -- | 0.453 | -- | -- | -- | 0.0298 | 2.05 | -- | -- | -- | -- |
| 15.25 | 0.182 | 13.1 | -- | -- | -0.839 | -- | -- | 0.151 | -- | 21.8 | 10 | -- | -- |
| 33 | 0.268 | 13.1 | -- | -- | -- | -- | -- | 0.0384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.17 | temperature | 20 | 90 | > th | dose dependent | sin | 23 | NA |
| 2 | 12.19 | temperature | 20 | 10 | > th | dose dependent | sin | 22 | NA |
| 19 | 12.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 21 | 12.49 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 33 | 12.65 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 35 | 12.68 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 41 | 12.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 45 | 12.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 51 | 12.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 58 | 12.86 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 13 |
| 62 | 12.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 65 | 12.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 71 | 12.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 73 | 12.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 97 | 13.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 108 | 13.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 113 | 13.17 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 130 | 13.23 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 193 | 13.44 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 201 | 13.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 205 | 13.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 241 | 13.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 264 | 13.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 265 | 13.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 360 | 13.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 394 | 13.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 474 | 13.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 506 | 13.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 550 | 13.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 569 | 13.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 614 | 13.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 16 |
| 621 | 13.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 637 | 13.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 15 |
| 718 | 14.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 719 | 14.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 832 | 14.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 903 | 14.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 926 | 14.17 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 970 | 14.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 11 |