Os10g0396400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing containing protein.
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Os10g0396400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.63 | 0.203 | 12.4 | 1.35 | 0.379 | -0.473 | 0.0576 | 1.2 | 0.448 | 2.89 | 25.6 | 1565 | -- | -- |
| 19.12 | 0.204 | 12.5 | 1.04 | 0.37 | -0.362 | 0.143 | -- | 0.37 | 2.6 | 25.85 | 1589 | -- | -- |
| 18.64 | 0.201 | 12.4 | 1.35 | 0.379 | -0.474 | -- | 1.21 | 0.446 | 2.94 | 25.67 | 1564 | -- | -- |
| 19.06 | 0.203 | 12.5 | 1.03 | 0.393 | -0.344 | -- | -- | 0.37 | 3 | 25.88 | 1537 | -- | -- |
| 21.48 | 0.216 | 12.4 | 1.2 | -- | -0.677 | -- | 0.868 | 0.493 | -- | 22.01 | 92 | -- | -- |
| 23.78 | 0.229 | 12.5 | 0.924 | 0.38 | -- | -0.00809 | -- | 0.342 | 3.11 | -- | -- | -- | -- |
| 23.78 | 0.228 | 12.5 | 0.924 | 0.38 | -- | -- | -- | 0.342 | 3.1 | -- | -- | -- | -- |
| 22.08 | 0.219 | 12.5 | 1.06 | -- | -0.622 | -- | -- | 0.448 | -- | 22 | 78 | -- | -- |
| 45.42 | 0.314 | 12.5 | -- | 0.404 | -0.141 | -- | -- | 0.234 | 3.19 | 27.71 | 1530 | -- | -- |
| 32.02 | 0.264 | 12.5 | 0.941 | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
| 46.3 | 0.318 | 12.5 | -- | 0.398 | -- | -- | -- | 0.239 | 3.11 | -- | -- | -- | -- |
| 50.01 | 0.329 | 12.5 | -- | -- | -0.452 | -- | -- | 0.271 | -- | 25.03 | 101 | -- | -- |
| 55.37 | 0.347 | 12.5 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.65 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 2 | 17.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 11 | 17.76 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 17 | 17.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 18 | 17.81 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 22 | 17.82 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 26 | 17.84 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 28 | 17.85 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 48 | 17.91 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 52 | 17.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 61 | 17.94 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 73 | 17.97 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 101 | 18.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 113 | 18.03 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 124 | 18.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 132 | 18.07 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 138 | 18.08 | humidity | 80.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 139 | 18.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 142 | 18.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 161 | 18.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 162 | 18.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 167 | 18.10 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 214 | 18.14 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 250 | 18.17 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 262 | 18.18 | humidity | 80.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 266 | 18.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 272 | 18.19 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 306 | 18.21 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 319 | 18.22 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 335 | 18.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 346 | 18.24 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 348 | 18.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 349 | 18.24 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 359 | 18.25 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 362 | 18.25 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 396 | 18.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 431 | 18.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 438 | 18.28 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 473 | 18.30 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 487 | 18.31 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 509 | 18.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 510 | 18.32 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 518 | 18.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 530 | 18.33 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 634 | 18.37 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 745 | 18.42 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 763 | 18.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 764 | 18.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 768 | 18.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 809 | 18.45 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 931 | 18.49 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 971 | 18.50 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 987 | 18.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 990 | 18.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 19 |