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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0395400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutathione S-transferase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.28 (0.0323) R2 : 0.81
β1 : 2.24 (0.119) R2dD : 0.155 R2D : 0.126
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.06 (0.103) R2dE : 0.658 R2E : 0.626
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.337 (0.0693) R2dN8 : 0.0133 R2N8 : 0.0378
σ : 0.605
deviance : 168.51
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 13.4
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.56 0.601 6.31 2.01 0.0927 -3.96 -1.75 -3 -0.386 22 14.34 11 19 --
166.97 0.602 6.27 2.24 0.122 -4.02 0.798 -- -0.332 5.31 13.28 12 19.2 --
167.39 0.603 6.29 2.19 0.18 -3.96 -- -0.859 -0.356 19.8 13.96 10 18.7 --
168.51 0.605 6.28 2.25 0.00298 -4.05 -- -- -0.337 3.13 13.4 11 19 --
167.46 0.603 6.28 2.2 -- -4.05 -- -0.781 -0.349 -- 13.49 10 19 --
248.29 0.739 6.39 1.82 2.8 -- 0.898 -- -0.61 23.7 -- -- -- --
251.77 0.743 6.4 1.79 2.8 -- -- -- -0.614 23.7 -- -- -- --
168.51 0.605 6.28 2.24 -- -4.06 -- -- -0.337 -- 13.4 10 19 --
292.28 0.801 6.35 -- 0.432 -3.44 -- -- -0.653 2.65 9.388 9 19.2 --
744.99 1.28 6.33 1.87 -- -- -- -- -0.58 -- -- -- -- --
335.78 0.857 6.44 -- 2.82 -- -- -- -0.813 23.8 -- -- -- --
292.59 0.799 6.35 -- -- -3.74 -- -- -0.659 -- 7.189 10 18.7 --
836.83 1.35 6.38 -- -- -- -- -- -0.787 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.04 temperature 20 90 > th dose dependent rect. 23 18
3 163.58 temperature 15 10 > th dose dependent sin 1 NA
4 163.80 temperature 10 90 > th dose dependent sin 2 NA
8 164.79 temperature 20 270 > th dose dependent rect. 20 19
11 165.16 temperature 20 10 > th dose dependent rect. 23 19
29 167.49 temperature 30 270 < th dose dependent rect. 2 16
39 168.14 temperature 30 90 < th dose dependent sin 2 NA
45 168.40 temperature 30 10 < th dose dependent sin 1 NA
57 169.35 temperature 15 270 > th dose dependent rect. 6 9
84 171.04 temperature 30 90 < th dose dependent rect. 5 14
96 171.97 temperature 30 90 < th dose dependent rect. 5 16
182 175.44 temperature 20 10 > th dose dependent rect. 7 11
183 175.48 temperature 30 90 < th dose dependent rect. 3 20
188 175.63 temperature 20 10 > th dose dependent rect. 7 22
428 182.12 temperature 20 10 > th dose dependent rect. 23 23
440 182.35 temperature 25 270 > th dose independent rect. 22 17
512 183.83 temperature 20 10 > th dose dependent no NA NA
612 185.24 temperature 25 90 > th dose independent rect. 7 10
692 186.50 temperature 20 10 > th dose dependent rect. 4 23
795 187.89 temperature 25 270 > th dose independent rect. 7 8
840 188.60 temperature 30 10 < th dose dependent rect. 1 23
884 189.06 temperature 25 270 < th dose independent rect. 2 16
939 189.72 temperature 20 10 > th dose dependent rect. 2 23
947 189.76 temperature 30 10 < th dose dependent rect. 3 23