Os10g0395000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os10g0395000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 460.9 | 1.01 | 4.56 | 0.852 | 1.55 | -1.85 | -0.584 | 2.2 | 0.22 | 1.68 | 5.017 | 4342 | 19.1 | 1.99 |
| 466.49 | 1.01 | 4.56 | 0.834 | 1.56 | -2.09 | -0.496 | -- | 0.2 | 1.59 | 4.905 | 4356 | 19.1 | 1.99 |
| 460.67 | 1 | 4.56 | 0.883 | 1.54 | -2.03 | -- | 2.33 | 0.212 | 1.59 | 4.954 | 4358 | 19.1 | 1.94 |
| 467.37 | 1.01 | 4.56 | 0.76 | 1.54 | -2.07 | -- | -- | 0.209 | 1.48 | 4.967 | 4358 | 19.1 | 1.95 |
| 601.77 | 1.14 | 4.55 | 0.937 | -- | -1.92 | -- | 2.77 | 0.229 | -- | 5.118 | 4343 | 18.8 | 2.05 |
| 545.83 | 1.1 | 4.64 | 0.429 | 1.56 | -- | -0.873 | -- | -0.0857 | 1.91 | -- | -- | -- | -- |
| 548.76 | 1.1 | 4.64 | 0.456 | 1.56 | -- | -- | -- | -0.0805 | 1.87 | -- | -- | -- | -- |
| 613 | 1.15 | 4.55 | 0.907 | -- | -2.12 | -- | -- | 0.245 | -- | 5.351 | 4345 | 18.8 | 2.06 |
| 480.57 | 1.02 | 4.57 | -- | 1.55 | -2.09 | -- | -- | 0.19 | 1.47 | 4.976 | 4389 | 19.1 | 1.8 |
| 695.42 | 1.23 | 4.62 | 0.52 | -- | -- | -- | -- | -0.0447 | -- | -- | -- | -- | -- |
| 554.23 | 1.1 | 4.65 | -- | 1.57 | -- | -- | -- | -0.131 | 1.88 | -- | -- | -- | -- |
| 631.72 | 1.17 | 4.57 | -- | -- | -1.99 | -- | -- | 0.141 | -- | 5.2 | 4345 | 19.1 | 1.82 |
| 702.54 | 1.24 | 4.63 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 462.99 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 3 | 464.61 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 4 | 464.89 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 5 | 465.05 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 7 | 465.44 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 8 | 465.66 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 10 | 465.70 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 11 | 465.89 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 16 | 466.24 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 22 | 467.13 | wind | 5 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 24 | 467.36 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 28 | 468.03 | wind | 5 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 35 | 468.44 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 37 | 468.50 | wind | 3 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 50 | 469.60 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 229 | 475.30 | wind | 5 | 4320 | > th | dose independent | sin | 14 | NA |
| 244 | 475.65 | wind | 7 | 4320 | < th | dose independent | sin | 16 | NA |
| 251 | 475.73 | wind | 5 | 4320 | > th | dose dependent | sin | 15 | NA |
| 260 | 475.97 | wind | 5 | 4320 | < th | dose independent | sin | 14 | NA |
| 264 | 476.01 | wind | 3 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 265 | 476.01 | humidity | 80 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 277 | 476.29 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 298 | 476.69 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 316 | 477.07 | humidity | 80 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 369 | 477.99 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 396 | 478.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 452 | 479.19 | wind | 9 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 479 | 479.53 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 482 | 479.55 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 486 | 479.59 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 496 | 479.71 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 512 | 479.93 | humidity | 80 | 1440 | < th | dose dependent | sin | 3 | NA |
| 513 | 479.94 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 524 | 480.07 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 529 | 480.11 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 536 | 480.21 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 541 | 480.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 561 | 480.45 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 567 | 480.49 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 577 | 480.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 579 | 480.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 583 | 480.60 | humidity | 60 | 1440 | > th | dose independent | sin | 21 | NA |
| 593 | 480.63 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 597 | 480.68 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 602 | 480.72 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 621 | 480.80 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 21 |
| 627 | 480.84 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 631 | 480.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 633 | 480.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 648 | 480.95 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 651 | 480.96 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 668 | 481.00 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 683 | 481.02 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 699 | 481.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 715 | 481.08 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 722 | 481.08 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 726 | 481.09 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 752 | 481.13 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 793 | 481.23 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 795 | 481.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 817 | 481.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 830 | 481.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 897 | 481.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 941 | 481.82 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 961 | 481.84 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 23 |