Os10g0394700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os10g0394700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 193.97 | 0.654 | 10.7 | -3.5 | 1.26 | -2.84 | 1.13 | -0.877 | 0.319 | 20.5 | 19.6 | 3610 | -- | -- |
| 195.01 | 0.65 | 10.7 | -3.57 | 1.26 | -2.61 | 1.08 | -- | 0.309 | 20.5 | 19.6 | 3609 | -- | -- |
| 198.08 | 0.655 | 10.7 | -3.52 | 1.26 | -2.87 | -- | -0.957 | 0.319 | 20.6 | 19.63 | 3596 | -- | -- |
| 199.3 | 0.658 | 10.7 | -3.65 | 1.26 | -2.65 | -- | -- | 0.3 | 20.6 | 19.61 | 3596 | -- | -- |
| 284.75 | 0.786 | 10.7 | -3.31 | -- | -2.5 | -- | -0.377 | 0.263 | -- | 20.8 | 2161 | -- | -- |
| 309.02 | 0.824 | 10.6 | -2.14 | 1.34 | -- | 1.21 | -- | 0.932 | 20.7 | -- | -- | -- | -- |
| 313.89 | 0.83 | 10.6 | -2.18 | 1.33 | -- | -- | -- | 0.931 | 20.8 | -- | -- | -- | -- |
| 284.11 | 0.785 | 10.7 | -3.3 | -- | -2.34 | -- | -- | 0.303 | -- | 20.86 | 2185 | -- | -- |
| 391.01 | 0.921 | 10.6 | -- | 1.26 | -1.06 | -- | -- | 0.911 | 20.3 | 22.31 | 1309 | -- | -- |
| 414.52 | 0.951 | 10.5 | -2.18 | -- | -- | -- | -- | 0.921 | -- | -- | -- | -- | -- |
| 439.22 | 0.98 | 10.5 | -- | 1.34 | -- | -- | -- | 1.17 | 20.7 | -- | -- | -- | -- |
| 465.88 | 1.01 | 10.6 | -- | -- | -1.15 | -- | -- | 0.856 | -- | 25.1 | 709 | -- | -- |
| 540.12 | 1.08 | 10.5 | -- | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.90 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 6 | 180.04 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 42 | 183.44 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 12 |
| 67 | 184.17 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 102 | 184.94 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 111 | 185.18 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 16 | NA |
| 114 | 185.22 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 118 | 185.26 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 10 | 14 |
| 119 | 185.27 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 134 | 185.38 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 149 | 185.53 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 167 | 185.66 | atmosphere | 1015 | 14400 | > th | dose dependent | sin | 19 | NA |
| 171 | 185.68 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 191 | 185.77 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 211 | 185.87 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 350 | 186.90 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 401 | 187.23 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 15 | NA |
| 444 | 187.48 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 20 | NA |
| 567 | 188.16 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 6 | 8 |
| 576 | 188.22 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 688 | 188.74 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 2 | NA |
| 703 | 188.81 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 725 | 188.89 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 847 | 189.34 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 16 |
| 862 | 189.39 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 866 | 189.39 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 894 | 189.48 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 17 |
| 945 | 189.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 951 | 189.70 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 954 | 189.71 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |