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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0394000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lanatoside 15'-O-acetylesterase precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.94 (0.0455) R2 : 0.445
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.01 (0.109) R2dC : 0.417 R2C : 0.403
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.49 (0.0958) R2dN8 : 0.0412 R2N8 : 0.0277
σ : 0.858
deviance : 336.79
__
_____
C
peak time of C : 0.571
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.44 0.816 5.97 0.512 1.98 -0.387 1.22 -2.91 -0.487 0.546 999.8 60 -- --
302.25 0.816 5.93 0.7 1.98 -0.876 1.22 -- -0.487 0.54 1000 80 -- --
307.77 0.817 5.97 0.454 1.98 -0.356 -- -3.18 -0.494 0.545 999.8 60 -- --
308.13 0.818 5.94 0.667 1.98 -0.924 -- -- -0.485 0.493 1000 60 -- --
549.71 1.1 6.06 -0.15 -- 1.43 -- -13.9 -0.466 -- 999.8 60 -- --
323.28 0.843 5.92 0.545 2 -- 1.28 -- -0.428 0.558 -- -- -- --
330.3 0.851 5.92 0.496 2 -- -- -- -0.435 0.559 -- -- -- --
552.38 1.1 5.9 0.745 -- -1.03 -- -- -0.467 -- 999.8 60 -- --
319.02 0.832 5.95 -- 1.99 -0.811 -- -- -0.56 0.564 999.8 60 -- --
580.68 1.13 5.89 0.566 -- -- -- -- -0.4 -- -- -- -- --
336.79 0.858 5.94 -- 2.01 -- -- -- -0.49 0.571 -- -- -- --
565.69 1.11 5.92 -- -- -0.839 -- -- -0.551 -- 1002 56 -- --
589.14 1.13 5.9 -- -- -- -- -- -0.463 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 288.23 atmosphere 1000 90 > th dose independent rect. 3 20
3 289.14 atmosphere 1000 10 > th dose independent rect. 3 20
8 289.82 humidity 90 4320 > th dose independent rect. 1 2
17 291.67 humidity 90 4320 < th dose independent rect. 1 1
25 292.31 atmosphere 995 10 > th dose dependent rect. 3 20
43 293.58 temperature 25 270 < th dose independent rect. 1 9
50 294.20 temperature 25 30 < th dose independent rect. 4 16
56 294.38 atmosphere 1000 90 > th dose independent rect. 3 10
58 294.41 atmosphere 1000 270 > th dose independent rect. 1 10
62 294.66 temperature 25 270 < th dose independent rect. 1 18
64 294.78 atmosphere 1005 270 < th dose dependent rect. 5 6
68 294.81 atmosphere 1000 270 > th dose independent rect. 1 8
70 294.89 wind 9 14400 > th dose dependent rect. 15 1
79 295.28 atmosphere 1000 10 > th dose independent rect. 24 23
80 295.31 humidity 90 4320 > th dose dependent rect. 1 2
82 295.35 atmosphere 1000 270 > th dose independent rect. 1 12
86 295.42 temperature 25 30 < th dose independent rect. 4 14
87 295.42 humidity 90 4320 > th dose dependent rect. 1 6
103 295.75 atmosphere 1015 270 < th dose dependent rect. 6 8
111 295.87 atmosphere 1005 90 < th dose dependent rect. 7 4
132 296.15 atmosphere 1005 10 < th dose dependent rect. 6 8
154 296.51 atmosphere 1005 10 < th dose dependent sin 4 NA
184 296.78 wind 9 14400 > th dose dependent rect. 13 1
186 296.80 atmosphere 1000 90 < th dose independent rect. 20 18
189 296.83 humidity 90 4320 < th dose independent rect. 24 7
207 297.00 humidity 90 90 > th dose independent rect. 3 19
216 297.23 atmosphere 1000 90 < th dose independent rect. 17 21
217 297.23 atmosphere 1005 10 < th dose dependent rect. 20 18
232 297.32 humidity 60 4320 < th dose independent rect. 17 16
238 297.41 atmosphere 1000 10 > th dose independent rect. 3 11
247 297.52 atmosphere 1000 90 > th dose independent sin 5 NA
248 297.52 atmosphere 1005 270 < th dose dependent rect. 7 1
261 297.63 humidity 90 90 > th dose dependent rect. 3 19
297 297.95 atmosphere 1000 90 < th dose independent sin 5 NA
309 298.01 humidity 80 14400 < th dose dependent rect. 20 12
312 298.03 wind 9 14400 > th dose independent rect. 15 1
331 298.15 humidity 80 14400 < th dose dependent rect. 20 9
337 298.18 atmosphere 1005 10 < th dose dependent rect. 4 10
349 298.26 atmosphere 1000 90 < th dose independent rect. 23 15
353 298.28 wind 9 270 < th dose dependent rect. 6 10
375 298.41 radiation 10 4320 > th dose independent rect. 15 1
378 298.41 atmosphere 1005 10 < th dose dependent rect. 18 20
394 298.52 temperature 25 270 > th dose independent rect. 1 9
396 298.53 humidity 60 4320 > th dose independent rect. 17 16
403 298.56 atmosphere 1000 90 < th dose independent rect. 6 8
425 298.71 humidity 60 4320 < th dose independent rect. 17 1
451 298.87 wind 9 14400 > th dose independent rect. 13 1
459 298.94 atmosphere 1005 10 < th dose dependent rect. 24 14
463 298.95 radiation 1 1440 < th dose dependent rect. 8 10
464 298.96 wind 5 270 < th dose independent rect. 6 9
473 299.01 humidity 90 4320 > th dose dependent rect. 5 1
484 299.06 atmosphere 1005 90 < th dose dependent rect. 23 15
490 299.09 radiation 10 4320 < th dose independent rect. 15 1
541 299.43 atmosphere 1000 720 > th dose independent rect. 1 4
546 299.44 humidity 90 4320 > th dose dependent rect. 24 14
550 299.45 humidity 60 4320 > th dose independent rect. 17 11
558 299.48 humidity 60 4320 > th dose independent rect. 17 3
575 299.56 humidity 60 4320 < th dose independent rect. 17 3
615 299.66 humidity 60 4320 < th dose dependent rect. 17 17
616 299.67 atmosphere 1005 90 < th dose independent rect. 8 3
656 299.80 humidity 80 14400 < th dose dependent rect. 23 9
674 299.85 atmosphere 1000 90 > th dose independent rect. 17 23
679 299.86 humidity 80 14400 < th dose dependent rect. 4 1
685 299.88 atmosphere 1000 90 > th dose independent rect. 3 5
686 299.88 atmosphere 1000 90 > th dose independent rect. 3 8
698 299.91 atmosphere 1000 90 < th dose independent rect. 1 13
699 299.91 humidity 60 4320 < th dose dependent rect. 16 19
744 300.11 temperature 25 270 > th dose independent sin 6 NA
746 300.11 atmosphere 1000 720 > th dose independent rect. 17 13
752 300.12 radiation 1 1440 < th dose dependent rect. 12 6
756 300.14 wind 5 90 < th dose independent rect. 8 19
799 300.26 wind 5 90 < th dose independent rect. 8 9
829 300.38 wind 9 14400 < th dose independent rect. 15 1
834 300.39 humidity 80 14400 < th dose dependent rect. 24 2
848 300.44 temperature 25 30 < th dose independent rect. 4 12
867 300.48 humidity 80 14400 < th dose dependent rect. 23 6
902 300.60 humidity 50 4320 > th dose dependent rect. 1 1
930 300.67 temperature 10 270 > th dose dependent rect. 5 10
933 300.68 atmosphere 1000 90 < th dose independent rect. 3 11
961 300.75 humidity 50 4320 > th dose independent rect. 16 21
973 300.77 wind 7 90 < th dose dependent rect. 8 9
981 300.81 temperature 25 30 < th dose independent rect. 4 4