Os10g0390500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alanine aminotransferase.
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Os10g0390500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alanine aminotransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.72 | 0.499 | 10.2 | -1.2 | 0.878 | -1.4 | -1.56 | 2.9 | -0.268 | 4.21 | 25.72 | 6225 | -- | -- |
| 117.3 | 0.504 | 10.2 | -1.86 | 0.929 | -1.36 | -1.58 | -- | -0.244 | 4.35 | 22.97 | 8807 | -- | -- |
| 116.98 | 0.504 | 10.1 | -1.19 | 0.869 | -1.44 | -- | 3.04 | -0.208 | 4.15 | 26.78 | 6436 | -- | -- |
| 124.29 | 0.519 | 10.2 | -1.85 | 0.934 | -1.36 | -- | -- | -0.236 | 4.53 | 22.92 | 8770 | -- | -- |
| 152.26 | 0.575 | 10.1 | -0.984 | -- | -1.45 | -- | 3.63 | -0.176 | -- | 27.1 | 6256 | -- | -- |
| 173.26 | 0.617 | 10.4 | -2.68 | 0.899 | -- | -1.68 | -- | -0.83 | 4.46 | -- | -- | -- | -- |
| 180.7 | 0.63 | 10.4 | -2.67 | 0.893 | -- | -- | -- | -0.821 | 4.68 | -- | -- | -- | -- |
| 170.26 | 0.608 | 10.2 | -1.77 | -- | -1.36 | -- | -- | -0.214 | -- | 22.8 | 8958 | -- | -- |
| 130.64 | 0.532 | 10.1 | -- | 0.918 | -2.29 | -- | -- | 0.198 | 4.4 | 21 | 29107 | -- | -- |
| 223.06 | 0.698 | 10.4 | -2.63 | -- | -- | -- | -- | -0.797 | -- | -- | -- | -- | -- |
| 368.43 | 0.898 | 10.3 | -- | 0.844 | -- | -- | -- | -0.523 | 4.76 | -- | -- | -- | -- |
| 171.74 | 0.61 | 10.1 | -- | -- | -2.36 | -- | -- | 0.238 | -- | 19.6 | 33460 | -- | -- |
| 406.19 | 0.941 | 10.3 | -- | -- | -- | -- | -- | -0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 6 | 109.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 8 | 109.50 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 14 | 109.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 23 | 110.11 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 36 | 110.63 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 39 | 110.65 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 44 | 110.65 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 49 | 110.77 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 58 | 110.91 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 75 | 111.17 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 84 | 111.44 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 103 | 111.54 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 113 | 111.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 152 | 111.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 178 | 111.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 197 | 112.24 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 216 | 112.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 220 | 112.69 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 240 | 112.89 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 243 | 112.95 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 267 | 113.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 304 | 113.47 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 305 | 113.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 308 | 113.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 309 | 113.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 328 | 113.69 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 336 | 113.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 358 | 113.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 362 | 113.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 378 | 113.88 | radiation | 10 | 43200 | < th | dose independent | sin | 11 | NA |
| 400 | 114.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 401 | 114.01 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 410 | 114.09 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 413 | 114.11 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 422 | 114.17 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 430 | 114.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 432 | 114.21 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 452 | 114.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 459 | 114.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 472 | 114.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 479 | 114.45 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 532 | 114.57 | humidity | 90 | 43200 | > th | dose dependent | sin | 12 | NA |
| 534 | 114.58 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 536 | 114.58 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 542 | 114.60 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 560 | 114.69 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 615 | 114.89 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 9 |
| 647 | 115.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 648 | 115.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 651 | 115.10 | humidity | 60 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 658 | 115.15 | radiation | 40 | 43200 | < th | dose independent | sin | 12 | NA |
| 720 | 115.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 746 | 115.54 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 751 | 115.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 789 | 115.67 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 802 | 115.71 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 887 | 115.97 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 891 | 115.98 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 925 | 116.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 936 | 116.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 938 | 116.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 996 | 116.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 6 |