Os10g0389800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os10g0389800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 332.06 | 0.856 | 8.33 | -6.4 | 0.139 | 3.5 | -0.802 | -3.45 | -0.896 | 12.4 | 25.89 | 1079 | 9.18 | -- |
| 334.79 | 0.852 | 8.26 | -5.69 | 0.0897 | 3.17 | -0.641 | -- | -0.732 | 12.9 | 25.97 | 1059 | 8.7 | -- |
| 334.15 | 0.851 | 8.32 | -6.31 | 0.186 | 3.46 | -- | -2.84 | -0.88 | 11.2 | 25.9 | 1061 | 9.07 | -- |
| 335.65 | 0.853 | 8.23 | -5.73 | 0.161 | 3.17 | -- | -- | -0.731 | 10.3 | 25.92 | 1057 | 9.06 | -- |
| 335.38 | 0.853 | 8.3 | -6.22 | -- | 3.38 | -- | -2.57 | -0.806 | -- | 26.1 | 1083 | 8.9 | -- |
| 673.11 | 1.22 | 8.23 | -4.87 | 0.789 | -- | 1.74 | -- | -0.713 | 2.78 | -- | -- | -- | -- |
| 683.6 | 1.22 | 8.24 | -4.91 | 0.797 | -- | -- | -- | -0.723 | 2.87 | -- | -- | -- | -- |
| 336.82 | 0.855 | 8.24 | -5.71 | -- | 3.12 | -- | -- | -0.724 | -- | 26.03 | 1080 | 8.91 | -- |
| 1143.92 | 1.58 | 8.07 | -- | 0.11 | 2.32 | -- | -- | 0.0101 | 8.6 | 26.4 | 949 | 6.55 | -- |
| 720.31 | 1.25 | 8.24 | -4.87 | -- | -- | -- | -- | -0.703 | -- | -- | -- | -- | -- |
| 1318.41 | 1.7 | 8.12 | -- | 0.701 | -- | -- | -- | -0.177 | 2.82 | -- | -- | -- | -- |
| 1144.55 | 1.58 | 8.07 | -- | -- | 2.31 | -- | -- | 0.0136 | -- | 26.39 | 952 | 6.55 | -- |
| 1346.87 | 1.71 | 8.11 | -- | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 353.72 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 2 | 355.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 3 | 358.04 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 18 | 361.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 19 | 362.80 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 34 | 368.61 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 62 | 368.65 | temperature | 30 | 1440 | > th | dose dependent | sin | 18 | NA |
| 64 | 368.76 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 104 | 369.11 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 242 | 370.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 255 | 371.49 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 288 | 371.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 299 | 372.46 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 301 | 372.59 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 314 | 373.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 333 | 373.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 335 | 373.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 341 | 373.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 375 | 374.66 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 400 | 375.61 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 427 | 377.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 445 | 378.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 448 | 378.30 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 453 | 378.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 455 | 378.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 458 | 378.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 461 | 378.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 464 | 378.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 466 | 379.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 486 | 379.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 488 | 379.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 490 | 379.62 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 494 | 379.84 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 601 | 379.93 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 640 | 380.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 644 | 380.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 657 | 380.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 662 | 380.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 664 | 380.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 665 | 380.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 671 | 380.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 672 | 380.52 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 705 | 380.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 796 | 382.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 805 | 382.81 | temperature | 30 | 1440 | < th | dose independent | sin | 20 | NA |
| 819 | 383.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 822 | 383.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 824 | 383.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 834 | 383.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |