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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0389500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.94 (0.0521) R2 : 0.93
β1 : 1.01 (0.192) R2dD : 0.00445 R2D : -0.00644
β2 : 7.14 (0.133) R2dC : 0.446 R2C : 0.429
β3 : -8.99 (0.158) R2dE : 0.506 R2E : 0.48
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.738 (0.112) R2dN8 : 0.00871 R2N8 : -0.00925
σ : 0.975
deviance : 437.82
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_____
C
peak time of C : 16.2
E
wheather : temperature
threshold : 14.37
memory length : 258
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.95
open length of G : 10.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
429.27 0.973 7.92 1.19 7.18 -9 0.095 2.63 0.784 16.3 15 263 2 10.4
438.68 0.975 7.92 1.15 7.16 -8.91 0.0766 -- 0.78 16.2 14.7 258 2 10.5
428.27 0.964 7.92 1.22 7.15 -8.94 -- 2.74 0.788 16.2 14.78 255 2 10.5
437.82 0.975 7.94 1.01 7.14 -8.99 -- -- 0.738 16.2 14.37 258 1.95 10.6
1440.83 1.77 7.91 0.882 -- -9.95 -- 3.64 1.33 -- 10.44 325 0.0158 9.72
1044.87 1.52 8.26 0.0408 9.94 -- 1.01 -- 0.0741 18.9 -- -- -- --
1047.47 1.52 8.26 0.0236 9.95 -- -- -- 0.077 18.9 -- -- -- --
1372.6 1.73 7.86 0.799 -- -9.94 -- -- 0.716 -- 9.845 274 0.0167 10.5
463.05 1 7.97 -- 7.11 -8.9 -- -- 0.576 16.1 13.81 260 1.97 10.5
6232.19 3.69 8.05 -0.191 -- -- -- -- -0.113 -- -- -- -- --
1047.48 1.51 8.26 -- 9.95 -- -- -- 0.0743 18.9 -- -- -- --
1386.01 1.73 7.85 -- -- -9.78 -- -- 0.653 -- 9.148 270 0.0167 10.6
6233.16 3.69 8.04 -- -- -- -- -- -0.0917 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.92 temperature 15 270 > th dose dependent rect. 2 10
41 569.28 temperature 20 10 > th dose dependent rect. 3 12
78 599.30 temperature 25 270 > th dose independent rect. 7 5
99 611.46 temperature 20 10 > th dose dependent rect. 8 7
116 621.24 temperature 30 90 < th dose dependent sin 3 NA
123 623.79 temperature 30 270 < th dose dependent rect. 23 16
124 624.60 temperature 20 720 > th dose independent rect. 2 10
172 640.19 temperature 15 270 > th dose dependent rect. 17 20
173 640.40 temperature 15 90 > th dose dependent rect. 19 19
183 642.40 temperature 10 720 > th dose dependent rect. 1 5
187 643.22 temperature 15 90 > th dose dependent sin 4 NA
190 643.96 temperature 30 270 < th dose dependent rect. 1 14
214 650.32 temperature 20 10 > th dose dependent rect. 20 19
215 650.36 temperature 25 270 < th dose dependent rect. 4 11
226 652.63 temperature 30 720 < th dose dependent rect. 5 3
228 653.16 temperature 15 10 > th dose dependent sin 2 NA
244 655.39 temperature 15 720 > th dose dependent rect. 2 3
281 660.71 temperature 20 720 > th dose independent rect. 2 3
339 671.17 temperature 25 720 < th dose dependent rect. 4 6
417 679.60 temperature 30 10 < th dose dependent rect. 6 12
527 688.40 temperature 20 720 < th dose independent rect. 3 7
559 691.78 temperature 20 720 < th dose independent rect. 3 10
585 693.62 temperature 25 10 > th dose independent rect. 8 7
691 700.03 temperature 20 720 < th dose independent rect. 5 2
724 702.03 temperature 20 720 > th dose independent sin 5 NA
747 703.32 temperature 20 720 < th dose independent sin 5 NA
960 716.31 temperature 30 10 < th dose dependent rect. 24 17