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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0386300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.0524) R2 : 0.565
β1 : 1.63 (0.194) R2dD : 0.074 R2D : 0.00383
β2 : 2.44 (0.161) R2dC : 0.327 R2C : 0.394
β3 : 1.38 (0.257) R2dE : 0.0438 R2E : 0.132
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.44 (0.984) R2dD*E : 0.089 R2D*E : -0.0452
γ1 : 0.817 (0.112) R2dN8 : 0.0669 R2N8 : 0.0336
σ : 0.969
deviance : 432.77
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_____
C
peak time of C : 16
E
wheather : wind
threshold : 4.7
memory length : 124
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.7
open length of G : 6.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
424.21 0.968 4.11 1.56 2.45 1.45 2.06 7.71 0.8 16 4.842 134 12.9 6.2
459.39 1.01 4.06 1.27 2.44 0.567 3.72 -- 0.807 16.1 3.9 133 13.7 5.85
432.77 0.969 4.12 1.63 2.44 1.38 -- 8.44 0.817 16 4.7 124 12.7 6.4
492.87 1.03 4.04 1.35 2.32 0.67 -- -- 0.804 15.9 2.484 184 11.8 7.15
592.19 1.13 4.16 2.04 -- 2.62 -- 8.72 0.7 -- 2.8 142 11.3 6.84
469.34 1.02 4.05 1.24 2.76 -- 3.4 -- 0.879 16.2 -- -- -- --
501.74 1.05 4.04 1.28 2.78 -- -- -- 0.898 16.2 -- -- -- --
500.01 1.04 4.05 1.25 -- 2.67 -- -- 0.876 -- -2.631e-06 334 9.03 8.37
529.3 1.07 4.07 -- 1.92 0.976 -- -- 0.68 15.8 0.4301 234 11.4 6.65
919.58 1.42 4.02 1.17 -- -- -- -- 0.824 -- -- -- -- --
544.72 1.09 4.07 -- 2.76 -- -- -- 0.756 16.2 -- -- -- --
537.14 1.08 4.04 -- -- 2.47 -- -- 0.762 -- -0.2989 307 9.02 8.93
955.42 1.44 4.05 -- -- -- -- -- 0.695 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 425.85 wind 3.0 90 > th dose dependent rect. 12 7
3 426.80 temperature 15.0 270 > th dose dependent rect. 3 8
8 428.82 wind 5.0 90 > th dose independent rect. 13 6
26 430.97 wind 5.0 270 > th dose independent rect. 13 4
27 430.97 wind 5.0 90 > th dose independent rect. 15 4
32 431.18 radiation 20.0 270 < th dose dependent rect. 12 10
42 431.61 radiation 1.0 270 < th dose independent sin 21 NA
47 431.79 humidity 80.0 270 < th dose independent rect. 11 7
48 431.83 radiation 1.0 270 > th dose independent sin 20 NA
53 432.02 radiation 1.0 270 < th dose dependent sin 22 NA
61 432.44 radiation 1.0 270 < th dose independent rect. 13 9
74 432.87 temperature 25.0 270 > th dose independent rect. 4 6
82 433.08 radiation 1.0 270 < th dose independent rect. 7 15
91 433.34 humidity 60.0 270 > th dose dependent rect. 19 1
115 433.80 temperature 30.0 270 < th dose dependent rect. 19 1
118 433.90 temperature 25.0 270 < th dose independent rect. 18 2
138 434.55 radiation 20.0 720 > th dose independent rect. 12 19
140 434.62 temperature 30.0 90 < th dose dependent rect. 19 4
141 434.64 radiation 20.0 720 > th dose independent rect. 12 5
179 434.85 temperature 25.0 90 < th dose independent rect. 18 5
193 435.07 radiation 1.0 270 < th dose dependent rect. 6 16
201 435.19 humidity 60.0 1440 > th dose independent rect. 19 5
211 435.27 humidity 60.0 1440 > th dose independent rect. 19 7
239 435.63 humidity 60.0 720 < th dose independent rect. 12 1
264 435.77 wind 3.0 10 > th dose independent rect. 13 6
267 435.78 humidity 70.0 270 < th dose independent rect. 12 4
276 435.93 temperature 25.0 270 > th dose independent rect. 8 1
289 436.03 radiation 10.0 270 < th dose dependent sin 19 NA
295 436.12 radiation 30.0 720 < th dose dependent sin 15 NA
307 436.26 radiation 1.0 720 > th dose dependent rect. 12 17
310 436.28 humidity 50.0 90 > th dose dependent rect. 18 5
313 436.29 radiation 1.0 720 > th dose dependent rect. 12 7
339 436.52 radiation 20.0 720 < th dose independent rect. 11 19
353 436.79 radiation 1.0 270 > th dose independent rect. 10 8
445 437.44 radiation 40.0 720 < th dose dependent rect. 11 19
475 437.59 humidity 80.0 270 > th dose independent rect. 18 2
486 437.71 wind 7.0 90 < th dose dependent rect. 18 5
496 437.79 wind 9.0 270 < th dose independent rect. 20 23
525 438.01 humidity 70.0 270 > th dose dependent rect. 15 7
528 438.04 radiation 40.0 720 < th dose dependent rect. 14 16
571 438.19 precipitation 0.1 270 < th dose independent rect. 20 23
572 438.19 precipitation 0.1 270 < th dose dependent rect. 20 23
579 438.23 radiation 1.0 270 > th dose dependent sin 16 NA
608 438.33 radiation 1.0 720 > th dose dependent sin 14 NA
614 438.37 radiation 30.0 720 > th dose independent sin 14 NA
629 438.39 humidity 80.0 90 > th dose dependent rect. 10 13
645 438.51 radiation 30.0 720 > th dose independent rect. 12 1
646 438.51 humidity 70.0 720 > th dose independent rect. 10 20
657 438.60 radiation 30.0 720 < th dose independent rect. 14 16
686 438.71 precipitation 0.1 270 < th dose independent rect. 22 20
688 438.71 precipitation 0.1 270 < th dose dependent rect. 22 20
711 438.82 humidity 70.0 270 > th dose dependent rect. 7 15
715 438.85 humidity 70.0 720 < th dose independent rect. 12 23
719 438.89 radiation 20.0 720 < th dose independent sin 15 NA
720 438.90 humidity 70.0 720 > th dose independent rect. 8 22
753 439.07 humidity 50.0 1440 > th dose independent rect. 17 22
756 439.10 humidity 80.0 270 > th dose independent rect. 15 7
775 439.19 precipitation 0.1 30 < th dose independent rect. 23 22
777 439.19 precipitation 0.1 30 < th dose dependent rect. 23 22
804 439.33 humidity 70.0 720 > th dose independent rect. 24 22
808 439.36 humidity 70.0 720 > th dose independent rect. 12 17
821 439.42 wind 3.0 10 < th dose independent rect. 18 5
822 439.42 humidity 80.0 270 > th dose independent rect. 11 11
825 439.43 humidity 50.0 720 < th dose independent sin 8 NA
866 439.54 radiation 30.0 720 > th dose dependent rect. 12 1
868 439.54 temperature 15.0 30 > th dose dependent rect. 21 15
875 439.57 wind 9.0 270 < th dose independent rect. 22 20
884 439.62 humidity 80.0 270 > th dose independent rect. 6 16
942 439.75 humidity 70.0 720 < th dose dependent rect. 12 1
945 439.76 humidity 70.0 720 > th dose independent rect. 2 18
946 439.76 humidity 50.0 720 < th dose independent rect. 17 22
949 439.77 humidity 70.0 720 > th dose independent rect. 24 20
956 439.81 temperature 20.0 270 > th dose independent rect. 5 17
992 439.89 radiation 1.0 720 > th dose dependent rect. 14 15
1000 439.91 radiation 1.0 720 > th dose dependent rect. 14 17