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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0379100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0482) R2 : 0.0909
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.28 (0.852) R2dE : 0.0766 R2E : 0.0758
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.245 (0.101) R2dN8 : 0.0151 R2N8 : 0.0142
σ : 0.905
deviance : 377.65
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.9
memory length : 84
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.01
open length of G : 0.659

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
367.85 0.901 3.07 0.342 0.104 1.22 0.667 -9.14 -0.207 7.66 20.32 108 2.05 0.883
379.99 0.908 3.1 0.198 0.0861 3.13 0.0282 -- -0.296 8.89 18.92 83 2 0.65
369.06 0.895 3.07 0.356 0.105 1.23 -- -8.98 -0.206 8.23 20.28 105 2.03 0.929
375.95 0.903 3.09 0.25 0.176 4.13 -- -- -0.284 9.26 18.91 84 2.02 0.65
369.68 0.895 3.07 0.357 -- 1.28 -- -8.89 -0.206 -- 20.3 108 2.05 0.874
406.38 0.945 3.08 0.234 0.107 -- 0.45 -- -0.245 9.53 -- -- -- --
406.69 0.944 3.08 0.247 0.144 -- -- -- -0.247 6.99 -- -- -- --
374.33 0.901 3.08 0.377 -- 5.37 -- -- -0.27 -- 18.89 84 2.01 0.66
377.3 0.905 3.09 -- 0.171 5.24 -- -- -0.28 9.76 18.9 84 2.02 0.653
407.78 0.944 3.09 0.25 -- -- -- -- -0.244 -- -- -- -- --
408.3 0.945 3.09 -- 0.146 -- -- -- -0.275 6.89 -- -- -- --
377.65 0.905 3.09 -- -- 5.28 -- -- -0.245 -- 18.9 84 2.01 0.659
409.43 0.944 3.09 -- -- -- -- -- -0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.39 temperature 20 90 < th dose dependent rect. 2 1
4 370.99 temperature 20 90 < th dose independent rect. 2 1
21 373.54 humidity 70 10 < th dose independent rect. 17 2
25 374.30 atmosphere 1000 10 < th dose independent rect. 6 2
26 374.32 atmosphere 1000 10 < th dose dependent rect. 6 2
41 374.63 humidity 70 30 < th dose dependent rect. 17 2
55 375.01 atmosphere 1000 90 < th dose dependent rect. 6 1
56 375.02 atmosphere 1000 90 < th dose independent rect. 6 1
125 376.56 temperature 25 720 < th dose independent rect. 1 5
166 379.43 temperature 25 720 > th dose independent rect. 24 5
169 379.59 temperature 25 720 > th dose independent rect. 1 2
174 379.84 wind 1 270 < th dose independent rect. 6 1
176 379.94 radiation 20 10 < th dose independent sin 10 NA
181 380.17 wind 1 30 < th dose independent rect. 17 1
193 380.17 wind 1 30 < th dose dependent rect. 17 1
213 380.40 radiation 20 10 > th dose independent sin 10 NA
234 380.84 wind 1 270 < th dose dependent rect. 6 1
241 380.99 temperature 25 720 > th dose dependent rect. 24 6
257 381.11 temperature 25 720 > th dose dependent rect. 2 1
259 381.13 temperature 25 720 > th dose dependent rect. 2 4
308 382.05 wind 1 90 < th dose dependent rect. 9 1
319 382.27 radiation 10 90 > th dose independent rect. 6 3
332 382.30 atmosphere 1000 10 < th dose independent rect. 4 5
338 382.45 atmosphere 995 1440 > th dose independent rect. 3 12
339 382.45 atmosphere 1000 10 < th dose dependent rect. 4 5
344 382.63 atmosphere 1000 270 < th dose independent rect. 4 1
345 382.64 atmosphere 1000 270 < th dose dependent rect. 4 1
367 383.22 radiation 20 10 > th dose independent rect. 8 1
372 383.46 radiation 20 10 > th dose independent rect. 7 3
394 383.67 atmosphere 1010 10 < th dose dependent rect. 6 2
395 383.70 atmosphere 1000 270 < th dose dependent rect. 3 5
409 384.12 atmosphere 995 1440 > th dose independent rect. 17 12
412 384.18 wind 1 90 < th dose independent rect. 8 2
417 384.32 temperature 25 720 > th dose independent rect. 23 11
425 384.43 temperature 30 270 > th dose independent rect. 15 20
460 384.91 radiation 10 90 > th dose independent sin 11 NA
461 384.91 wind 1 10 > th dose independent rect. 2 2
476 384.91 temperature 30 270 < th dose independent rect. 7 23
477 384.97 radiation 1 90 > th dose dependent rect. 4 5
496 385.26 temperature 30 270 < th dose independent rect. 9 19
500 385.28 atmosphere 995 1440 > th dose independent rect. 12 17
523 385.60 radiation 40 10 < th dose dependent sin 10 NA
535 385.68 radiation 10 10 > th dose dependent sin 11 NA
537 385.69 humidity 60 270 < th dose dependent rect. 14 1
572 386.06 temperature 30 1440 > th dose independent rect. 15 20
577 386.09 atmosphere 1015 270 < th dose dependent rect. 4 4
586 386.20 temperature 30 1440 < th dose independent rect. 14 21
616 386.21 humidity 50 10 > th dose independent rect. 4 22
671 386.49 atmosphere 1000 30 > th dose independent rect. 4 22
677 386.54 atmosphere 995 1440 > th dose independent rect. 12 4
703 386.67 atmosphere 995 1440 > th dose independent rect. 3 17
707 386.68 atmosphere 1000 720 < th dose dependent rect. 20 12
725 386.82 atmosphere 995 1440 > th dose independent rect. 12 8
728 386.85 atmosphere 995 1440 > th dose independent rect. 12 10
729 386.87 humidity 50 270 > th dose independent rect. 9 19
737 386.94 temperature 30 1440 < th dose independent rect. 14 4
746 387.02 temperature 30 1440 < th dose independent rect. 3 13
747 387.02 atmosphere 995 1440 > th dose independent rect. 3 19
750 387.03 temperature 30 1440 < th dose independent rect. 3 15
759 387.06 temperature 30 1440 > th dose independent rect. 15 3
778 387.10 temperature 30 1440 < th dose independent rect. 17 23
784 387.12 humidity 70 4320 > th dose independent rect. 17 14
786 387.13 temperature 30 1440 < th dose independent rect. 21 19
787 387.14 temperature 30 1440 < th dose independent rect. 19 21
788 387.14 temperature 30 1440 < th dose independent rect. 21 21
789 387.14 temperature 30 1440 < th dose independent rect. 19 23
791 387.15 temperature 30 270 > th dose independent rect. 15 3
808 387.19 temperature 30 1440 < th dose independent rect. 8 10
811 387.20 temperature 30 1440 < th dose independent rect. 8 8
813 387.20 temperature 30 1440 < th dose independent rect. 3 19
852 387.26 humidity 70 4320 > th dose independent rect. 17 8
863 387.27 humidity 70 4320 > th dose independent rect. 17 6
879 387.29 temperature 25 720 > th dose independent sin 9 NA
882 387.29 temperature 30 1440 < th dose independent rect. 8 21
890 387.30 temperature 20 90 < th dose independent rect. 2 6
897 387.31 temperature 30 1440 < th dose independent no NA NA
918 387.35 temperature 30 1440 < th dose independent rect. 8 14
920 387.35 temperature 30 1440 > th dose dependent rect. 15 1
922 387.36 humidity 90 90 < th dose independent rect. 7 2
940 387.39 wind 1 10 < th dose independent rect. 14 4
949 387.40 temperature 30 1440 < th dose independent sin 23 NA