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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0377000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0397) R2 : 0.173
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.62 (0.175) R2dE : 0.168 R2E : 0.173
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0389 (0.0864) R2dN8 : 0.000509 R2N8 : 0.00518
σ : 0.738
deviance : 251.09
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.46
memory length : 732
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
236.15 0.722 4.12 0.605 0.674 1.61 -0.42 -1.98 0.114 12.5 30.35 286 -- --
239.94 0.721 4.16 0.262 0.644 1.55 -0.32 -- 0.0241 12.1 29.7 320 -- --
235.93 0.715 4.12 0.635 0.515 1.65 -- -2.34 0.0992 12.4 31.66 420 -- --
236.73 0.717 4.16 0.282 0.663 1.68 -- -- 0.001 10.7 24.32 307 -- --
242.11 0.725 4.11 0.839 -- 1.78 -- -3.01 0.128 -- 36.71 778 -- --
272.75 0.774 4.23 -0.157 0.643 -- 0.0549 -- -0.29 9.49 -- -- -- --
272.76 0.773 4.23 -0.154 0.643 -- -- -- -0.29 9.5 -- -- -- --
249.11 0.735 4.18 0.295 -- 1.69 -- -- -0.0188 -- 31.56 761 -- --
237.97 0.718 4.17 -- 0.612 1.53 -- -- -0.0443 10.4 24.32 330 -- --
297.08 0.805 4.24 -0.159 -- -- -- -- -0.288 -- -- -- -- --
273.39 0.773 4.22 -- 0.643 -- -- -- -0.273 9.52 -- -- -- --
251.09 0.738 4.19 -- -- 1.62 -- -- -0.0389 -- 31.46 732 -- --
297.75 0.805 4.24 -- -- -- -- -- -0.271 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.06 temperature 10 720 > th dose dependent rect. 17 16
7 232.70 temperature 15 720 > th dose dependent rect. 11 22
14 233.70 temperature 10 270 > th dose dependent rect. 8 23
17 233.88 temperature 15 720 > th dose dependent sin 12 NA
29 234.29 temperature 10 720 > th dose dependent rect. 16 22
41 234.62 temperature 10 1440 > th dose dependent rect. 4 6
42 234.65 temperature 30 1440 < th dose dependent rect. 4 6
55 234.82 temperature 30 270 < th dose dependent rect. 3 22
85 235.14 temperature 30 1440 < th dose dependent rect. 7 2
100 235.22 temperature 15 1440 > th dose dependent rect. 7 2
109 235.26 temperature 30 270 < th dose dependent rect. 14 23
129 235.40 temperature 15 270 > th dose dependent rect. 19 23
169 235.55 temperature 30 720 < th dose dependent rect. 17 16
193 235.72 temperature 10 1440 > th dose dependent sin 6 NA
234 235.88 temperature 30 1440 < th dose dependent sin 6 NA
262 235.96 temperature 25 270 < th dose dependent rect. 17 23
454 236.36 temperature 30 270 < th dose dependent no NA NA
524 236.46 temperature 10 720 > th dose dependent no NA NA
616 236.60 temperature 30 720 < th dose dependent sin 11 NA
617 236.60 temperature 25 1440 < th dose dependent rect. 4 1
686 236.69 temperature 25 270 < th dose dependent rect. 6 23
730 236.78 temperature 30 1440 < th dose dependent rect. 24 19
813 236.85 temperature 30 720 < th dose dependent rect. 22 23
999 237.08 temperature 10 1440 > th dose dependent rect. 4 23