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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0375000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0394) R2 : 0.342
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.04 (0.134) R2dE : 0.362 R2E : 0.334
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.178 (0.0855) R2dN8 : 0.00869 R2N8 : -0.0199
σ : 0.735
deviance : 248.93
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C
peak time of C : --
E
wheather : temperature
threshold : 20.09
memory length : 667
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.28
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
240.51 0.729 3.18 -0.162 0.469 1.78 -0.956 -0.127 -0.134 5.8 21.59 825 7.65 --
240.52 0.722 3.18 -0.137 0.472 1.77 -0.959 -- -0.127 5.8 21.55 825 7.71 --
242.62 0.725 3.18 -0.212 0.48 1.78 -- -0.309 -0.134 6.09 21.4 805 7.77 --
242.72 0.726 3.18 -0.141 0.486 1.76 -- -- -0.116 6.17 21.4 819 7.91 --
248.08 0.734 3.21 -0.29 -- 2.1 -- -0.374 -0.222 -- 19.99 673 6.37 --
308.15 0.823 3.11 0.233 1.1 -- -0.449 -- 0.173 4.3 -- -- -- --
308.7 0.823 3.11 0.237 1.1 -- -- -- 0.176 4.27 -- -- -- --
248.11 0.734 3.21 -0.178 -- 2.07 -- -- -0.202 -- 20.06 675 6.33 --
243.2 0.726 3.17 -- 0.496 1.72 -- -- -0.0955 6.13 21.47 820 7.91 --
374.05 0.904 3.11 0.281 -- -- -- -- 0.205 -- -- -- -- --
310.19 0.824 3.11 -- 1.11 -- -- -- 0.149 4.27 -- -- -- --
248.93 0.735 3.2 -- -- 2.04 -- -- -0.178 -- 20.09 667 6.28 --
376.14 0.905 3.12 -- -- -- -- -- 0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 235.51 temperature 25 720 > th dose independent rect. 18 4
2 235.67 temperature 20 720 > th dose dependent rect. 18 9
11 237.80 temperature 10 720 > th dose dependent rect. 18 7
12 237.85 temperature 25 720 < th dose independent rect. 17 9
32 239.76 temperature 30 720 < th dose dependent rect. 17 9
36 240.09 temperature 10 720 > th dose dependent rect. 18 11
83 242.64 temperature 20 720 > th dose dependent sin 13 NA
104 243.67 temperature 20 270 > th dose dependent rect. 24 6
135 245.01 temperature 25 720 < th dose independent sin 15 NA
148 245.57 temperature 30 720 < th dose dependent sin 15 NA
175 246.66 temperature 25 720 > th dose independent sin 15 NA
211 247.85 temperature 10 720 > th dose dependent sin 14 NA
225 248.18 temperature 25 720 < th dose independent rect. 19 2
283 249.88 temperature 30 270 < th dose dependent rect. 19 15
296 250.22 temperature 20 10 > th dose dependent rect. 2 5
299 250.32 temperature 25 720 < th dose independent rect. 16 16
358 251.51 temperature 20 270 > th dose independent rect. 2 3
458 253.08 temperature 20 270 > th dose independent rect. 24 6
467 253.20 temperature 10 720 > th dose dependent rect. 13 16
479 253.34 temperature 10 720 > th dose dependent rect. 11 18
503 253.78 temperature 25 720 > th dose independent rect. 11 15
533 254.20 temperature 20 10 > th dose dependent rect. 24 7
535 254.22 temperature 20 30 > th dose independent rect. 2 5
657 255.68 temperature 20 10 > th dose dependent rect. 21 10
699 256.20 temperature 10 270 > th dose dependent rect. 9 22
860 257.83 temperature 20 10 > th dose independent rect. 4 3
1000 258.69 temperature 20 1440 > th dose dependent sin 9 NA