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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0374600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.24 (0.0326) R2 : 0.031
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.263 (0.0687) R2dN8 : 0.0401 R2N8 : 0.031
σ : 0.615
deviance : 173.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.88 0.6 4.23 0.0155 0.028 0.956 1.12 3.94 -0.243 15.4 996.3 4200 -- --
163.48 0.596 4.23 -0.0677 0.0181 0.934 1.13 -- -0.238 15.1 997.8 1157 -- --
165.87 0.6 4.23 0.0194 0.122 0.814 -- 3.39 -0.247 20.3 996.5 4251 -- --
166.84 0.602 4.22 -0.0472 0.138 0.971 -- -- -0.195 19.4 997.9 1245 -- --
166.9 0.602 4.23 0.03 -- 0.912 -- 3.84 -0.238 -- 996.3 4272 -- --
169.71 0.611 4.24 -0.0028 0.00267 -- 1.06 -- -0.266 15 -- -- -- --
172.55 0.615 4.24 0.0204 0.127 -- -- -- -0.259 20.5 -- -- -- --
167.44 0.603 4.23 -0.046 -- 0.845 -- -- -0.236 -- 998 1138 -- --
166.6 0.601 4.24 -- 0.12 0.852 -- -- -0.23 19.8 997.9 1139 -- --
173.45 0.615 4.24 0.0198 -- -- -- -- -0.26 -- -- -- -- --
172.56 0.614 4.24 -- 0.127 -- -- -- -0.261 20.5 -- -- -- --
167.44 0.603 4.23 -- -- 0.765 -- -- -0.23 -- 998.2 1101 -- --
173.46 0.615 4.24 -- -- -- -- -- -0.263 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.72 wind 5.0 90 < th dose independent rect. 24 5
2 148.90 radiation 10.0 10 < th dose dependent rect. 1 5
3 149.12 wind 1.0 90 > th dose independent rect. 24 5
5 149.28 wind 1.0 270 > th dose independent rect. 24 2
6 149.35 wind 5.0 270 < th dose independent rect. 24 2
7 149.46 wind 9.0 90 < th dose independent rect. 5 19
10 149.50 radiation 1.0 90 < th dose independent rect. 24 5
12 149.54 precipitation 0.1 90 < th dose independent rect. 24 5
14 149.54 precipitation 0.1 90 < th dose dependent rect. 24 5
19 149.61 temperature 15.0 90 > th dose independent rect. 24 5
20 149.61 atmosphere 1010.0 90 < th dose independent rect. 24 5
23 149.62 temperature 30.0 90 < th dose independent rect. 24 5
24 149.62 humidity 50.0 90 > th dose independent rect. 24 5
27 149.62 atmosphere 995.0 90 > th dose independent rect. 24 5
31 149.62 temperature 10.0 90 > th dose independent rect. 5 19
36 149.83 wind 5.0 10 < th dose independent rect. 1 4
39 149.92 precipitation 0.1 270 < th dose independent rect. 24 2
40 149.92 precipitation 0.1 270 < th dose dependent rect. 24 2
42 150.01 atmosphere 1010.0 270 < th dose independent rect. 24 2
43 150.02 temperature 15.0 270 > th dose independent rect. 24 2
45 150.03 temperature 30.0 270 < th dose independent rect. 24 2
46 150.03 humidity 50.0 270 > th dose independent rect. 24 2
49 150.03 atmosphere 995.0 270 > th dose independent rect. 24 2
50 150.03 radiation 1.0 270 < th dose independent rect. 24 2
55 150.03 temperature 10.0 270 > th dose independent rect. 2 22
56 150.03 radiation 1.0 270 < th dose dependent rect. 24 2
62 150.05 humidity 50.0 90 > th dose independent rect. 5 19
63 150.08 atmosphere 1000.0 90 > th dose independent rect. 5 19
66 150.21 wind 9.0 270 < th dose independent rect. 2 22
69 150.26 precipitation 0.1 90 < th dose independent rect. 5 19
70 150.26 precipitation 0.1 90 < th dose dependent rect. 5 19
74 150.43 wind 9.0 90 < th dose dependent rect. 24 5
78 150.50 atmosphere 1015.0 90 < th dose independent rect. 5 19
79 150.52 atmosphere 1015.0 90 < th dose dependent rect. 24 5
84 150.58 radiation 10.0 10 < th dose independent rect. 1 5
103 150.68 temperature 10.0 270 > th dose dependent rect. 24 2
104 150.70 atmosphere 995.0 30 > th dose dependent rect. 5 20
107 150.75 temperature 10.0 90 > th dose dependent rect. 24 5
109 150.82 wind 9.0 90 < th dose dependent rect. 5 19
135 151.12 precipitation 0.1 270 < th dose independent rect. 2 22
136 151.12 precipitation 0.1 270 < th dose dependent rect. 2 22
141 151.16 wind 9.0 270 < th dose dependent rect. 24 2
190 151.30 precipitation 0.1 10 < th dose independent rect. 5 20
196 151.30 precipitation 0.1 10 < th dose dependent rect. 5 20
202 151.39 wind 9.0 10 < th dose dependent rect. 1 4
205 151.41 radiation 1.0 90 < th dose dependent rect. 24 16
228 151.44 humidity 50.0 90 > th dose dependent rect. 24 5
292 151.65 atmosphere 1015.0 270 < th dose dependent rect. 24 2
307 151.79 atmosphere 995.0 270 > th dose independent rect. 2 22
318 151.86 atmosphere 1015.0 10 < th dose dependent rect. 24 6
339 151.90 wind 1.0 90 > th dose independent rect. 5 19
341 151.91 atmosphere 995.0 270 > th dose independent rect. 3 20
345 151.96 precipitation 0.1 270 < th dose independent rect. 3 20
346 151.96 precipitation 0.1 270 < th dose dependent rect. 3 20
357 152.03 radiation 1.0 90 < th dose independent rect. 24 16
360 152.05 radiation 1.0 90 < th dose independent rect. 24 11
385 152.21 wind 1.0 270 > th dose independent rect. 3 20
395 152.28 humidity 50.0 270 > th dose dependent rect. 24 2
412 152.43 radiation 1.0 10 < th dose dependent rect. 1 16
522 152.88 humidity 50.0 270 > th dose independent rect. 3 20
596 153.11 atmosphere 1015.0 270 < th dose independent rect. 3 20
598 153.12 wind 9.0 1440 < th dose independent rect. 2 5
599 153.12 temperature 10.0 1440 > th dose independent rect. 2 5
602 153.12 temperature 30.0 1440 < th dose independent rect. 2 5
606 153.12 humidity 50.0 1440 > th dose independent rect. 2 5
611 153.12 atmosphere 995.0 1440 > th dose independent rect. 2 5
612 153.12 radiation 40.0 1440 < th dose independent rect. 2 5
617 153.12 temperature 10.0 1440 > th dose independent rect. 7 19
691 153.37 temperature 30.0 90 < th dose dependent rect. 24 5
734 153.46 temperature 25.0 10 > th dose dependent rect. 19 14
739 153.48 wind 1.0 270 > th dose independent rect. 2 22
756 153.54 radiation 1.0 10 < th dose independent rect. 1 15
783 153.65 atmosphere 995.0 30 > th dose dependent rect. 1 4
818 153.69 humidity 50.0 90 > th dose dependent rect. 5 19
824 153.74 atmosphere 1000.0 270 > th dose independent rect. 18 15
831 153.77 atmosphere 995.0 270 > th dose dependent rect. 24 2
845 153.83 humidity 80.0 90 > th dose independent rect. 5 19
964 154.17 atmosphere 995.0 30 > th dose dependent rect. 5 9
970 154.20 atmosphere 1000.0 10 > th dose independent rect. 5 9