Os10g0371100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0371100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 271.48 | 0.774 | 5.25 | -1.79 | 2.74 | -3.2 | -1.79 | -2.23 | -0.622 | 7.76 | 2.367 | 1407 | -- | -- |
| 275.36 | 0.773 | 5.29 | -1.94 | 2.73 | -2.85 | -1.92 | -- | -0.667 | 7.62 | 2.796 | 1413 | -- | -- |
| 280.57 | 0.78 | 5.24 | -1.78 | 2.76 | -3.2 | -- | -2.46 | -0.609 | 7.76 | 2.352 | 1404 | -- | -- |
| 284.75 | 0.786 | 5.3 | -2.1 | 2.58 | -2.96 | -- | -- | -0.705 | 7.36 | 2.762 | 1438 | -- | -- |
| 609.58 | 1.15 | 5.34 | -1.91 | -- | -3.85 | -- | -2.09 | -0.665 | -- | 2.458 | 1482 | -- | -- |
| 393.26 | 0.93 | 5.19 | -1.48 | 2.62 | -- | -2 | -- | -0.251 | 7.4 | -- | -- | -- | -- |
| 403.98 | 0.941 | 5.19 | -1.53 | 2.62 | -- | -- | -- | -0.249 | 7.31 | -- | -- | -- | -- |
| 609.29 | 1.15 | 5.37 | -2.1 | -- | -3.61 | -- | -- | -0.716 | -- | 2.78 | 1487 | -- | -- |
| 387.56 | 0.917 | 5.27 | -- | 2.57 | -2.31 | -- | -- | -0.526 | 7.33 | 5.042 | 1447 | -- | -- |
| 768.93 | 1.3 | 5.25 | -1.48 | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
| 465.31 | 1.01 | 5.15 | -- | 2.61 | -- | -- | -- | -0.0786 | 7.35 | -- | -- | -- | -- |
| 711.64 | 1.24 | 5.31 | -- | -- | -2.6 | -- | -- | -0.445 | -- | 5.43 | 1495 | -- | -- |
| 826.77 | 1.34 | 5.22 | -- | -- | -- | -- | -- | -0.0404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 2 | 275.49 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 3 | 276.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 4 | 277.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 5 | 277.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 6 | 277.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 7 | 277.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 10 | 278.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 11 | 278.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 12 | 278.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 14 | 278.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 15 | 278.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 21 | 278.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 25 | 278.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 26 | 278.11 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 35 | 278.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 62 | 278.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 64 | 278.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 68 | 278.92 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 71 | 279.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 72 | 279.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 73 | 279.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 78 | 279.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 80 | 279.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 82 | 279.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 87 | 279.62 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 88 | 279.65 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 89 | 279.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 147 | 279.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 150 | 280.07 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 156 | 280.42 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 160 | 280.60 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 161 | 280.61 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 165 | 280.74 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 166 | 280.75 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 173 | 280.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 186 | 280.93 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 196 | 280.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 197 | 280.95 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 204 | 280.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 206 | 280.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 241 | 281.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 244 | 281.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 247 | 281.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 259 | 282.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 337 | 283.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 345 | 284.05 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 8 |
| 350 | 284.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 397 | 284.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 417 | 284.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 467 | 285.12 | temperature | 25 | 14400 | > th | dose dependent | sin | 14 | NA |
| 489 | 285.37 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 511 | 285.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 515 | 285.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 519 | 285.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 520 | 285.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 521 | 285.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 523 | 285.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 533 | 285.83 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 553 | 286.00 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 568 | 286.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 635 | 286.78 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 663 | 286.88 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 699 | 287.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 7 |
| 713 | 287.10 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 824 | 287.64 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 830 | 287.67 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 878 | 287.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 883 | 287.84 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 886 | 287.85 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |