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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0370600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0426) R2 : 0.354
β1 : -1.19 (0.158) R2dD : 0.0876 R2D : 0.035
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.42 (0.138) R2dE : 0.151 R2E : 0.129
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.5 (0.71) R2dD*E : 0.168 R2D*E : 0.116
γ1 : -0.251 (0.0909) R2dN8 : 0.0139 R2N8 : -0.000424
σ : 0.797
deviance : 292.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.18
memory length : 20
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.14
open length of G : 2.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
283.93 0.792 3.41 -1.24 0.289 1.26 -1.19 -7.04 -0.258 2.14 20.2 26 1.04 2.97
337.6 0.862 3.41 -1.04 0.315 1.21 -2.63 -- -0.248 2.73 19.91 18 1.08 2.95
289.15 0.792 3.42 -1.22 0.276 1.24 -- -7.2 -0.267 2.01 20.16 25 1.05 2.97
360.84 0.885 3.4 -0.951 0.292 1.18 -- -- -0.23 2.27 20 12 1.07 2.94
292.54 0.797 3.41 -1.19 -- 1.42 -- -7.5 -0.251 -- 20.18 20 1.14 2.88
378.56 0.912 3.41 -1.03 0.689 -- -2.61 -- -0.259 2.91 -- -- -- --
401.68 0.939 3.4 -0.97 0.681 -- -- -- -0.243 3.01 -- -- -- --
364.77 0.89 3.4 -0.958 -- 1.38 -- -- -0.221 -- 19.97 10 1.07 2.95
385.23 0.914 3.37 -- 0.28 1.22 -- -- -0.115 2.31 20 9 1.07 2.95
428.3 0.967 3.4 -0.941 -- -- -- -- -0.226 -- -- -- -- --
426.46 0.966 3.37 -- 0.662 -- -- -- -0.135 3 -- -- -- --
388.96 0.919 3.37 -- -- 1.37 -- -- -0.116 -- 19.94 8 1.07 2.94
451.65 0.992 3.37 -- -- -- -- -- -0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 287.84 temperature 20.0 30 > th dose independent rect. 1 3
3 290.20 precipitation 0.1 270 > th dose dependent rect. 2 2
4 290.22 precipitation 0.1 270 > th dose independent rect. 2 2
5 291.88 wind 1.0 90 < th dose independent rect. 23 5
6 294.69 wind 1.0 270 < th dose dependent rect. 22 4
7 295.50 wind 7.0 4320 > th dose dependent rect. 17 1
8 295.90 wind 7.0 4320 > th dose independent rect. 17 3
14 297.17 wind 9.0 4320 > th dose independent rect. 17 1
18 297.94 wind 7.0 4320 > th dose dependent rect. 17 3
19 297.98 wind 1.0 90 < th dose independent rect. 1 3
20 298.01 wind 7.0 4320 < th dose independent rect. 17 3
33 298.91 wind 7.0 4320 > th dose independent rect. 15 7
34 298.98 wind 9.0 4320 < th dose independent rect. 17 1
40 299.33 wind 7.0 4320 > th dose independent rect. 15 11
41 299.36 wind 7.0 4320 > th dose independent rect. 15 13
48 299.80 wind 7.0 4320 > th dose independent rect. 15 15
58 300.26 wind 7.0 4320 < th dose independent rect. 15 7
63 300.48 wind 7.0 4320 < th dose independent rect. 15 11
79 301.24 wind 7.0 4320 < th dose independent rect. 15 15
87 301.61 temperature 20.0 270 > th dose independent rect. 22 6
94 302.03 wind 1.0 270 < th dose dependent rect. 15 11
98 302.36 wind 7.0 4320 > th dose dependent rect. 15 11
103 302.47 wind 1.0 270 < th dose dependent rect. 17 9
155 303.57 temperature 20.0 10 > th dose independent rect. 1 5
193 304.82 wind 5.0 4320 < th dose independent rect. 24 1
198 305.03 atmosphere 1005.0 720 > th dose independent rect. 18 6
257 306.58 wind 1.0 270 < th dose independent rect. 1 1
261 306.69 wind 5.0 4320 > th dose independent rect. 24 1
281 307.21 atmosphere 1005.0 720 < th dose independent rect. 21 1
285 307.30 wind 1.0 270 < th dose independent rect. 23 1
325 308.06 temperature 20.0 10 > th dose independent rect. 3 1
333 308.28 wind 7.0 4320 > th dose independent sin 14 NA
354 308.73 wind 3.0 4320 > th dose dependent rect. 24 1
377 309.12 wind 7.0 4320 < th dose independent sin 14 NA
386 309.30 temperature 20.0 270 > th dose independent rect. 1 1
414 310.03 atmosphere 1005.0 720 < th dose independent rect. 19 3
434 310.51 wind 1.0 10 < th dose dependent rect. 1 3
449 310.87 temperature 15.0 30 > th dose dependent rect. 1 3
466 311.36 wind 7.0 4320 > th dose dependent sin 13 NA
483 311.51 temperature 20.0 30 > th dose independent rect. 12 16
499 312.03 temperature 20.0 30 > th dose independent rect. 14 14
528 312.58 wind 1.0 10 < th dose dependent rect. 15 13
612 314.72 wind 1.0 90 > th dose independent sin 16 NA
614 314.78 temperature 20.0 30 > th dose independent rect. 16 12
624 314.92 atmosphere 1010.0 270 < th dose dependent rect. 23 4
627 314.95 atmosphere 1005.0 720 < th dose independent rect. 16 9
686 316.08 radiation 1.0 1440 < th dose independent rect. 13 2
687 316.08 radiation 1.0 1440 < th dose dependent rect. 13 2
704 316.41 atmosphere 1010.0 270 < th dose dependent rect. 22 6
714 316.52 radiation 1.0 1440 < th dose independent rect. 11 4
715 316.52 radiation 1.0 1440 < th dose dependent rect. 11 4
722 316.62 wind 7.0 1440 > th dose dependent rect. 1 7
741 317.03 wind 7.0 1440 > th dose dependent rect. 1 4
760 317.42 radiation 1.0 1440 > th dose independent rect. 11 4
763 317.46 radiation 1.0 1440 > th dose independent rect. 13 2
817 318.03 temperature 20.0 10 > th dose independent rect. 22 8
874 318.76 radiation 20.0 1440 < th dose independent rect. 11 2
885 318.91 wind 7.0 1440 > th dose independent rect. 1 4
907 319.26 precipitation 0.1 30 > th dose independent rect. 3 5
921 319.28 precipitation 0.1 30 > th dose dependent rect. 3 5
954 319.37 precipitation 0.1 30 > th dose dependent rect. 3 3
959 319.39 precipitation 0.1 30 > th dose independent rect. 3 3
986 319.77 temperature 20.0 90 > th dose independent sin 10 NA