Os10g0370400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os10g0370400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.53 | 0.377 | 9.62 | 1.29 | 0.468 | -2 | 0.423 | -0.577 | 0.45 | 15.6 | 23.83 | 1069 | -- | -- |
| 64.93 | 0.375 | 9.63 | 1.22 | 0.463 | -1.93 | 0.318 | -- | 0.434 | 15.5 | 23.8 | 1072 | -- | -- |
| 64.92 | 0.375 | 9.62 | 1.28 | 0.467 | -2.09 | -- | -0.623 | 0.464 | 15.5 | 23.42 | 1091 | -- | -- |
| 65.26 | 0.376 | 9.63 | 1.2 | 0.466 | -1.95 | -- | -- | 0.438 | 15.5 | 23.76 | 1075 | -- | -- |
| 76.56 | 0.408 | 9.61 | 1.29 | -- | -2.07 | -- | -0.73 | 0.482 | -- | 23.11 | 1213 | -- | -- |
| 113.93 | 0.5 | 9.56 | 1.76 | 0.362 | -- | 0.642 | -- | 0.795 | 17 | -- | -- | -- | -- |
| 114.99 | 0.502 | 9.55 | 1.76 | 0.366 | -- | -- | -- | 0.798 | 16.9 | -- | -- | -- | -- |
| 77 | 0.409 | 9.63 | 1.2 | -- | -1.9 | -- | -- | 0.451 | -- | 23.46 | 1184 | -- | -- |
| 85.72 | 0.431 | 9.68 | -- | 0.46 | -2.43 | -- | -- | 0.237 | 16.3 | 22.2 | 2611 | -- | -- |
| 122.06 | 0.516 | 9.55 | 1.74 | -- | -- | -- | -- | 0.788 | -- | -- | -- | -- | -- |
| 196.37 | 0.656 | 9.6 | -- | 0.335 | -- | -- | -- | 0.602 | 17 | -- | -- | -- | -- |
| 88.79 | 0.439 | 9.67 | -- | -- | -1.87 | -- | -- | 0.242 | -- | 20 | 28255 | -- | -- |
| 202.26 | 0.664 | 9.59 | -- | -- | -- | -- | -- | 0.595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 6 | 65.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 13 |
| 18 | 65.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 30 | 65.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 40 | 65.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 42 | 65.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 45 | 65.64 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 58 | 65.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 74 | 65.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 88 | 65.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 99 | 65.96 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 106 | 65.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 114 | 66.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 116 | 66.06 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 119 | 66.08 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 128 | 66.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 139 | 66.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 148 | 66.18 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 168 | 66.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 273 | 66.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 551 | 68.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 592 | 68.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 636 | 68.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 643 | 68.55 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 716 | 68.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 894 | 69.46 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 905 | 69.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 974 | 69.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 991 | 69.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |