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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0369900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Myo-inositol-1-phosphate synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0413) R2 : 0.475
β1 : -0.797 (0.16) R2dD : 0.0358 R2D : 0.104
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.716 (0.183) R2dE : 0.0286 R2E : 0.147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.02 (0.491) R2dD*E : 0.21 R2D*E : 0.367
γ1 : -0.356 (0.0882) R2dN8 : 0.0271 R2N8 : 0.0313
σ : 0.744
deviance : 254.89
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.37
memory length : 248
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.76 0.744 3.21 -0.834 0.256 0.654 -0.291 -5.01 -0.369 0.357 19.35 258 -- --
294.55 0.799 3.31 -1.35 0.227 2.18 -0.968 -- -0.451 0.549 18.6 262 -- --
250.93 0.738 3.2 -0.817 0.258 0.651 -- -5.07 -0.363 0.758 19.4 251 -- --
295.22 0.8 3.31 -1.08 0.264 2.44 -- -- -0.468 0.181 18.6 264 -- --
254.89 0.744 3.2 -0.797 -- 0.716 -- -5.02 -0.356 -- 19.37 248 -- --
363.96 0.894 3.37 -1.85 0.399 -- -1.46 -- -0.712 1.68 -- -- -- --
372.32 0.904 3.36 -1.8 0.398 -- -- -- -0.703 1.25 -- -- -- --
299.63 0.806 3.31 -1.06 -- 2.49 -- -- -0.462 -- 18.64 254 -- --
319.71 0.833 3.28 -- 0.305 3.14 -- -- -0.305 23.7 18.53 331 -- --
382.11 0.913 3.36 -1.78 -- -- -- -- -0.695 -- -- -- -- --
457.46 1 3.32 -- 0.368 -- -- -- -0.503 1.07 -- -- -- --
324.96 0.84 3.27 -- -- 3.03 -- -- -0.31 -- 18.69 264 -- --
465.86 1.01 3.31 -- -- -- -- -- -0.498 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 250.62 temperature 20 270 < th dose independent rect. 21 22
4 251.48 temperature 20 270 > th dose independent rect. 16 23
10 252.76 temperature 20 270 > th dose independent rect. 13 23
19 254.86 temperature 20 270 < th dose independent rect. 16 23
24 255.32 temperature 20 270 < th dose independent rect. 13 23
25 255.35 temperature 20 270 < th dose independent no NA NA
28 255.58 temperature 20 270 > th dose independent rect. 20 23
29 255.62 temperature 20 270 > th dose independent no NA NA
34 255.92 temperature 20 270 > th dose independent rect. 23 23
40 256.48 temperature 20 270 > th dose independent rect. 5 23
45 256.64 temperature 20 4320 < th dose dependent rect. 6 6
47 256.77 temperature 20 270 < th dose independent rect. 5 23
58 257.25 temperature 20 270 > th dose independent rect. 2 23
67 257.86 temperature 20 270 < th dose independent rect. 9 23
72 258.19 temperature 20 270 < th dose independent rect. 3 23
76 258.27 humidity 50 43200 < th dose dependent rect. 11 1
80 258.47 temperature 20 4320 < th dose dependent sin 1 NA
84 258.57 temperature 20 4320 < th dose dependent rect. 5 13
137 259.46 humidity 60 43200 < th dose independent rect. 7 1
145 259.50 humidity 50 43200 < th dose independent rect. 7 3
148 259.52 humidity 50 43200 > th dose independent rect. 7 3
157 259.61 humidity 50 43200 < th dose independent rect. 6 5
173 259.76 humidity 60 43200 > th dose independent rect. 7 1
198 260.06 humidity 50 43200 < th dose independent rect. 21 14
230 260.32 humidity 50 43200 > th dose independent rect. 20 15
241 260.45 humidity 50 43200 > th dose independent rect. 17 18
255 260.56 humidity 50 43200 < th dose independent rect. 17 18
263 260.61 humidity 70 43200 < th dose dependent rect. 20 15
274 260.68 humidity 50 43200 > th dose independent rect. 2 9
316 260.91 temperature 20 4320 < th dose dependent rect. 16 22
326 260.97 humidity 60 43200 < th dose dependent rect. 8 1
328 260.98 temperature 20 4320 < th dose dependent no NA NA
346 261.08 humidity 50 43200 > th dose independent rect. 16 20
348 261.09 humidity 60 43200 < th dose dependent rect. 16 20
375 261.25 humidity 50 43200 > th dose independent sin 10 NA
398 261.32 temperature 20 1440 < th dose independent rect. 5 7
427 261.42 radiation 20 14400 < th dose independent rect. 17 14
438 261.47 humidity 60 43200 < th dose dependent rect. 17 18
453 261.52 temperature 20 4320 < th dose independent rect. 9 1
459 261.57 humidity 50 43200 < th dose independent sin 9 NA
477 261.65 humidity 60 43200 < th dose dependent sin 10 NA
503 261.77 temperature 20 4320 > th dose independent rect. 9 1
506 261.79 temperature 20 1440 > th dose independent rect. 6 6
612 262.05 humidity 50 43200 < th dose dependent rect. 15 2
664 262.25 humidity 50 43200 < th dose dependent sin 4 NA
678 262.29 humidity 60 43200 > th dose independent rect. 19 2
692 262.33 temperature 15 14400 < th dose dependent rect. 4 1
698 262.35 radiation 1 14400 > th dose independent rect. 10 1
715 262.39 humidity 60 43200 < th dose independent rect. 19 3
735 262.42 atmosphere 1015 14400 < th dose independent rect. 17 2
747 262.45 humidity 50 43200 < th dose dependent rect. 7 12
772 262.51 humidity 50 43200 < th dose dependent rect. 21 22
785 262.52 humidity 50 43200 < th dose dependent rect. 7 22
793 262.53 humidity 50 43200 < th dose dependent rect. 7 15
870 262.61 temperature 20 270 > th dose independent sin 7 NA
874 262.61 humidity 50 43200 < th dose dependent no NA NA
906 262.62 temperature 15 43200 > th dose independent rect. 6 1
920 262.63 humidity 70 43200 < th dose dependent rect. 19 6
984 262.74 temperature 15 43200 < th dose independent rect. 5 2
985 262.74 humidity 60 43200 > th dose independent rect. 19 6
991 262.75 humidity 70 43200 < th dose independent rect. 24 1