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Os10g0369600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SCARECROW gene regulator-like (Phytochrome A signal transduction 1 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0166) R2 : 0.886
β1 : 0.888 (0.0608) R2dD : 0.0551 R2D : 0.0276
β2 : 2.44 (0.0431) R2dC : 0.801 R2C : 0.807
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.39 (0.0354) R2dN8 : 0.0404 R2N8 : 0.0217
σ : 0.312
deviance : 44.4
__
_____
C
peak time of C : 5.14
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.35 0.295 13.9 0.823 1.51 -1.15 -3.08 -3.99 0.395 4.81 1.51 706 -- --
42.43 0.303 13.9 0.904 1.68 -0.855 -0.147 -- 0.405 5.44 2.039 569 -- --
42.67 0.304 13.9 0.95 1.35 -1.2 -- 0.107 0.479 5.78 1.744 559 -- --
42.25 0.303 13.9 0.933 1.54 -1.02 -- -- 0.441 5.36 1.99 597 -- --
49.72 0.328 13.9 1.04 -- -2.7 -- -0.00333 0.528 -- 1.41 639 -- --
44.4 0.312 13.9 0.888 2.44 -- 0.0138 -- 0.39 5.14 -- -- -- --
44.4 0.312 13.9 0.888 2.44 -- -- -- 0.39 5.14 -- -- -- --
49.71 0.328 13.9 1.02 -- -2.69 -- -- 0.516 -- 1.43 637 -- --
62.38 0.368 13.9 -- 1.65 -0.945 -- -- 0.366 5.57 8.055 546 -- --
356.63 0.882 13.9 0.974 -- -- -- -- 0.452 -- -- -- -- --
65.17 0.378 13.9 -- 2.46 -- -- -- 0.291 5.12 -- -- -- --
77.15 0.409 13.9 -- -- -2.64 -- -- 0.42 -- 1.58 629 -- --
381.67 0.912 13.9 -- -- -- -- -- 0.343 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.27 atmosphere 995.0 90 > th dose dependent rect. 10 13
2 37.49 wind 9.0 270 < th dose independent rect. 12 14
4 37.57 atmosphere 995.0 10 > th dose dependent rect. 10 13
6 37.70 precipitation 0.1 270 < th dose independent rect. 12 14
7 37.70 precipitation 0.1 270 < th dose dependent rect. 12 14
8 37.78 temperature 10.0 270 > th dose independent rect. 2 10
9 37.78 atmosphere 995.0 270 > th dose independent rect. 2 10
10 37.78 atmosphere 1015.0 270 < th dose independent rect. 2 10
11 37.78 temperature 10.0 270 > th dose independent rect. 12 14
12 37.80 atmosphere 1000.0 90 > th dose independent rect. 10 13
13 37.83 atmosphere 995.0 270 > th dose dependent rect. 7 14
15 37.94 wind 9.0 270 < th dose independent rect. 2 10
19 38.02 precipitation 0.1 270 < th dose independent rect. 2 10
20 38.02 precipitation 0.1 270 < th dose dependent rect. 2 10
21 38.09 precipitation 0.1 270 < th dose independent rect. 21 11
22 38.09 wind 1.0 270 > th dose independent rect. 12 14
23 38.09 precipitation 0.1 270 < th dose dependent rect. 21 11
27 38.13 radiation 30.0 270 < th dose independent rect. 8 4
28 38.15 wind 7.0 270 < th dose independent rect. 21 11
31 38.22 atmosphere 995.0 720 > th dose dependent rect. 9 3
39 38.27 temperature 15.0 270 > th dose independent rect. 8 13
43 38.30 atmosphere 995.0 10 > th dose dependent rect. 10 4
48 38.35 radiation 30.0 270 < th dose independent rect. 9 2
50 38.35 atmosphere 995.0 90 > th dose dependent rect. 10 3
51 38.35 atmosphere 1015.0 270 < th dose dependent rect. 12 5
61 38.43 atmosphere 1015.0 270 < th dose independent rect. 8 13
62 38.43 atmosphere 1015.0 10 < th dose dependent rect. 13 7
66 38.46 humidity 70.0 270 > th dose independent rect. 21 11
67 38.46 radiation 30.0 270 < th dose independent rect. 21 11
69 38.46 radiation 40.0 270 < th dose dependent rect. 8 4
73 38.49 temperature 10.0 270 > th dose independent rect. 21 11
74 38.49 temperature 30.0 270 < th dose independent rect. 21 11
75 38.49 humidity 50.0 270 > th dose independent rect. 21 11
77 38.49 atmosphere 995.0 270 > th dose independent rect. 21 11
118 38.67 atmosphere 1000.0 90 > th dose independent rect. 10 3
146 38.83 atmosphere 1000.0 10 > th dose independent rect. 10 3
156 38.85 radiation 1.0 720 > th dose independent rect. 13 20
161 38.86 radiation 1.0 720 > th dose independent rect. 12 22
169 38.88 radiation 10.0 720 < th dose dependent rect. 1 6
183 38.90 atmosphere 1000.0 720 > th dose independent rect. 10 2
190 38.93 wind 1.0 30 > th dose independent rect. 13 7
207 38.98 atmosphere 1000.0 10 > th dose independent rect. 10 13
211 38.99 radiation 1.0 720 > th dose independent rect. 18 23
220 39.00 radiation 40.0 90 < th dose dependent sin 13 NA
226 39.02 temperature 30.0 270 < th dose independent rect. 2 10
227 39.02 humidity 50.0 270 > th dose independent rect. 2 10
232 39.03 radiation 40.0 270 < th dose independent rect. 8 13
237 39.04 wind 9.0 270 < th dose independent rect. 8 13
240 39.05 atmosphere 1015.0 270 < th dose dependent rect. 13 2
250 39.08 temperature 15.0 270 > th dose independent rect. 17 5
261 39.11 wind 9.0 270 < th dose independent rect. 22 19
267 39.13 radiation 40.0 90 < th dose independent rect. 23 11
268 39.13 precipitation 0.1 270 < th dose independent rect. 8 13
269 39.13 precipitation 0.1 270 < th dose dependent rect. 8 13
270 39.14 wind 9.0 90 < th dose independent rect. 23 10
271 39.14 temperature 10.0 90 > th dose independent rect. 23 10
272 39.14 humidity 50.0 90 > th dose independent rect. 23 10
273 39.14 atmosphere 995.0 90 > th dose independent rect. 23 10
275 39.14 wind 9.0 270 < th dose independent rect. 21 21
290 39.16 radiation 40.0 270 < th dose dependent sin 16 NA
292 39.16 radiation 40.0 270 < th dose dependent rect. 21 10
293 39.17 humidity 90.0 270 < th dose independent rect. 12 5
294 39.17 radiation 1.0 720 < th dose independent rect. 1 7
297 39.18 atmosphere 995.0 270 > th dose independent rect. 17 5
299 39.18 precipitation 0.1 90 < th dose independent rect. 23 10
301 39.18 precipitation 0.1 90 < th dose dependent rect. 23 10
303 39.19 temperature 20.0 270 > th dose independent rect. 12 5
304 39.19 precipitation 0.1 720 < th dose independent rect. 3 7
311 39.19 precipitation 0.1 720 < th dose dependent rect. 3 7
312 39.19 temperature 10.0 90 > th dose dependent rect. 13 14
326 39.22 radiation 1.0 720 > th dose independent rect. 5 12
350 39.23 atmosphere 995.0 270 > th dose dependent rect. 4 8
355 39.24 temperature 15.0 10 > th dose independent rect. 20 17
356 39.24 atmosphere 1015.0 30 < th dose independent rect. 20 17
358 39.25 temperature 30.0 90 < th dose independent rect. 10 3
361 39.25 temperature 15.0 270 > th dose independent rect. 17 19
362 39.25 radiation 1.0 720 < th dose independent rect. 24 22
373 39.27 radiation 30.0 270 < th dose independent rect. 3 9
383 39.28 temperature 15.0 270 > th dose independent rect. 18 3
389 39.28 wind 9.0 720 < th dose independent rect. 22 17
390 39.28 radiation 1.0 720 < th dose independent rect. 1 20
401 39.30 radiation 10.0 720 < th dose dependent rect. 17 20
402 39.31 wind 1.0 270 > th dose independent rect. 12 5
405 39.31 precipitation 0.1 720 < th dose independent rect. 22 17
406 39.31 precipitation 0.1 270 < th dose independent rect. 22 19
409 39.31 precipitation 0.1 720 < th dose dependent rect. 22 17
410 39.31 precipitation 0.1 270 < th dose dependent rect. 22 19
422 39.33 atmosphere 995.0 270 > th dose independent rect. 17 19
427 39.34 wind 9.0 10 < th dose independent rect. 13 7
428 39.34 temperature 20.0 30 > th dose independent rect. 13 7
434 39.34 atmosphere 995.0 270 > th dose dependent rect. 17 4
440 39.35 atmosphere 1015.0 270 < th dose independent rect. 22 19
442 39.35 temperature 10.0 270 > th dose dependent rect. 12 4
445 39.35 temperature 10.0 270 > th dose dependent rect. 11 6
446 39.35 radiation 10.0 720 < th dose dependent rect. 24 21
447 39.36 radiation 40.0 270 < th dose independent sin 14 NA
459 39.37 radiation 20.0 270 < th dose independent rect. 17 5
465 39.37 temperature 10.0 270 > th dose independent rect. 22 19
476 39.38 temperature 10.0 270 > th dose dependent rect. 22 19
481 39.39 radiation 40.0 270 < th dose dependent rect. 17 5
490 39.41 temperature 15.0 1440 > th dose independent rect. 11 3
492 39.41 wind 9.0 270 < th dose independent rect. 12 5
499 39.41 radiation 40.0 720 < th dose dependent rect. 16 21
502 39.42 temperature 10.0 10 > th dose independent rect. 13 7
504 39.42 atmosphere 1010.0 10 < th dose independent rect. 13 7
509 39.42 atmosphere 995.0 10 > th dose independent rect. 20 17
515 39.43 humidity 70.0 270 < th dose independent rect. 13 2
516 39.43 humidity 50.0 270 > th dose independent rect. 17 5
527 39.44 atmosphere 1000.0 270 > th dose independent rect. 18 3
534 39.44 temperature 30.0 90 < th dose independent rect. 23 10
539 39.44 wind 9.0 10 < th dose independent rect. 13 21
547 39.45 precipitation 0.1 30 < th dose independent rect. 13 7
560 39.45 wind 9.0 720 < th dose dependent rect. 5 4
562 39.45 precipitation 0.1 30 < th dose dependent rect. 13 7
570 39.46 precipitation 0.1 270 < th dose independent rect. 17 5
572 39.46 temperature 10.0 1440 > th dose independent rect. 14 7
579 39.46 temperature 10.0 1440 > th dose independent rect. 21 17
582 39.46 atmosphere 995.0 1440 > th dose independent rect. 21 17
585 39.46 radiation 30.0 720 < th dose independent rect. 16 21
586 39.46 precipitation 0.1 30 < th dose independent rect. 13 21
590 39.46 precipitation 0.1 270 < th dose dependent rect. 17 5
592 39.46 radiation 10.0 720 < th dose dependent rect. 1 11
593 39.46 radiation 10.0 720 < th dose dependent rect. 17 15
594 39.46 precipitation 0.1 30 < th dose dependent rect. 13 21
595 39.47 humidity 90.0 10 < th dose independent rect. 10 3
597 39.47 radiation 1.0 10 > th dose independent rect. 10 3
598 39.47 wind 9.0 270 < th dose independent rect. 17 5
601 39.47 wind 1.0 270 > th dose independent rect. 12 19
619 39.48 temperature 10.0 30 > th dose dependent rect. 13 7
623 39.49 radiation 1.0 720 > th dose independent sin 1 NA
633 39.49 wind 1.0 270 > th dose independent rect. 17 5
638 39.49 radiation 1.0 270 < th dose dependent rect. 17 4
652 39.51 temperature 10.0 10 > th dose independent rect. 10 3
657 39.51 atmosphere 1015.0 10 < th dose independent rect. 10 3
658 39.51 precipitation 0.1 10 < th dose independent rect. 10 3
662 39.51 wind 9.0 10 < th dose independent rect. 20 17
665 39.51 temperature 10.0 10 > th dose independent rect. 13 21
666 39.51 temperature 15.0 270 > th dose dependent rect. 13 2
669 39.51 precipitation 0.1 10 < th dose dependent rect. 10 3
677 39.52 atmosphere 1010.0 270 < th dose independent rect. 12 5
690 39.53 radiation 10.0 270 < th dose independent rect. 18 3
713 39.54 humidity 50.0 270 > th dose independent rect. 18 3
726 39.54 temperature 10.0 270 > th dose independent rect. 21 21
727 39.54 atmosphere 995.0 270 > th dose independent rect. 15 22
732 39.54 radiation 10.0 270 < th dose dependent rect. 14 8
743 39.55 precipitation 0.1 270 < th dose independent rect. 12 5
747 39.55 wind 9.0 720 < th dose independent rect. 6 18
749 39.55 atmosphere 995.0 90 > th dose dependent sin 22 NA
752 39.55 precipitation 0.1 270 < th dose dependent rect. 12 5
760 39.55 radiation 10.0 720 < th dose dependent rect. 1 18
766 39.56 wind 9.0 270 < th dose independent rect. 18 3
771 39.56 temperature 10.0 270 > th dose independent rect. 12 5
778 39.56 precipitation 0.1 270 < th dose independent rect. 21 21
784 39.56 precipitation 0.1 270 < th dose dependent rect. 21 21
786 39.57 wind 9.0 10 < th dose independent rect. 10 3
797 39.57 temperature 10.0 1440 > th dose independent rect. 14 21
832 39.59 humidity 70.0 270 < th dose independent rect. 12 4
834 39.59 atmosphere 995.0 270 > th dose independent rect. 16 7
857 39.60 atmosphere 995.0 270 > th dose dependent sin 0 NA
878 39.61 humidity 50.0 270 > th dose independent rect. 22 19
891 39.62 temperature 20.0 270 > th dose independent rect. 13 2
901 39.62 temperature 10.0 270 > th dose dependent rect. 5 12
906 39.63 wind 1.0 270 > th dose independent rect. 18 3
914 39.63 atmosphere 1015.0 270 < th dose independent rect. 17 19
920 39.64 radiation 10.0 270 > th dose independent rect. 13 2
924 39.64 wind 9.0 720 < th dose independent rect. 6 9
931 39.64 radiation 1.0 720 < th dose independent rect. 18 23
932 39.64 wind 9.0 90 < th dose dependent rect. 23 11
937 39.65 wind 9.0 720 < th dose independent rect. 3 15
952 39.66 radiation 1.0 270 > th dose independent rect. 12 5
958 39.66 precipitation 0.1 270 < th dose independent rect. 11 22
964 39.66 radiation 1.0 270 > th dose dependent rect. 12 20
967 39.66 precipitation 0.1 270 < th dose dependent rect. 11 22
987 39.67 radiation 40.0 270 < th dose dependent rect. 8 14
991 39.68 radiation 10.0 270 < th dose independent sin 17 NA