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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0368200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.56 (0.0526) R2 : 0.686
β1 : -4.35 (0.189) R2dD : 0.389 R2D : 0.145
β2 : 1.26 (0.124) R2dC : 0.0705 R2C : -0.0451
β3 : -1.31 (0.148) R2dE : 0.0632 R2E : -0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.64 (0.12) R2dN8 : 0.536 R2N8 : 0.138
σ : 0.964
deviance : 428.52
__
_____
C
peak time of C : 1.56
E
wheather : radiation
threshold : 17
memory length : 12974
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
424.95 0.969 6.36 -3.44 1.23 -2.79 1.03 -10.5 -2.21 1.62 1.13 1438 -- --
448.65 0.987 6.55 -4.41 1.25 -1.25 0.974 -- -2.5 1.78 40.66 2914 -- --
426.3 0.962 6.34 -3.34 1.14 -2.57 -- -10.3 -2.14 1.89 1.136 1414 -- --
428.52 0.964 6.56 -4.35 1.26 -1.31 -- -- -2.64 1.56 17 12974 -- --
480.82 1.02 6.37 -3.57 -- -3.01 -- -9.97 -2.22 -- 1.282 1374 -- --
496.69 1.04 6.5 -4.4 1.31 -- 1.2 -- -2.27 1.67 -- -- -- --
502.26 1.05 6.5 -4.44 1.32 -- -- -- -2.28 1.81 -- -- -- --
512.18 1.05 6.6 -4.32 -- -1.71 -- -- -2.62 -- 5.615 2761 -- --
861.8 1.37 6.45 -- 1.09 -2.06 -- -- -2.21 2.26 69.99 28690 -- --
607.31 1.15 6.49 -4.39 -- -- -- -- -2.25 -- -- -- -- --
1021.85 1.5 6.39 -- 1.24 -- -- -- -1.79 1.71 -- -- -- --
939.81 1.43 6.5 -- -- -2.23 -- -- -2.32 -- 130.7 28593 -- --
1114.78 1.56 6.38 -- -- -- -- -- -1.77 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 402.78 humidity 90.0 43200 < th dose dependent rect. 14 1
2 404.51 temperature 25.0 43200 > th dose independent rect. 14 1
3 404.87 temperature 25.0 43200 < th dose independent rect. 15 1
4 404.89 temperature 25.0 43200 < th dose independent rect. 13 3
12 405.23 temperature 25.0 43200 < th dose dependent rect. 17 1
14 405.33 temperature 25.0 43200 < th dose dependent rect. 16 3
25 405.66 temperature 25.0 43200 > th dose independent rect. 10 6
26 405.66 temperature 25.0 43200 < th dose independent rect. 10 6
27 405.69 temperature 25.0 43200 < th dose independent rect. 10 8
28 405.75 temperature 25.0 43200 < th dose independent rect. 12 6
30 405.77 temperature 25.0 43200 > th dose independent rect. 10 8
38 405.90 temperature 25.0 43200 < th dose independent rect. 10 1
47 405.99 temperature 25.0 43200 > th dose independent rect. 10 1
66 406.31 temperature 25.0 43200 < th dose dependent rect. 8 11
77 406.47 precipitation 0.1 43200 > th dose dependent rect. 13 4
145 407.13 temperature 25.0 43200 < th dose dependent rect. 9 1
147 407.14 precipitation 0.1 43200 > th dose independent rect. 8 12
150 407.18 humidity 50.0 43200 > th dose dependent rect. 14 1
153 407.19 precipitation 0.1 43200 < th dose independent rect. 8 12
155 407.19 precipitation 0.1 43200 < th dose dependent rect. 8 12
157 407.23 precipitation 0.1 43200 > th dose independent rect. 13 4
165 407.29 temperature 25.0 43200 < th dose dependent sin 22 NA
167 407.31 temperature 20.0 43200 < th dose independent rect. 24 1
181 407.44 temperature 25.0 43200 < th dose dependent rect. 8 3
190 407.49 temperature 20.0 43200 > th dose independent rect. 23 2
206 407.59 radiation 10.0 14400 < th dose dependent rect. 13 2
208 407.60 precipitation 0.1 43200 < th dose independent rect. 13 4
209 407.60 precipitation 0.1 43200 < th dose dependent rect. 13 4
213 407.63 precipitation 0.1 43200 > th dose independent rect. 12 8
231 407.79 precipitation 0.1 43200 > th dose independent rect. 4 14
246 407.86 precipitation 0.1 43200 < th dose independent rect. 12 8
248 407.86 precipitation 0.1 43200 < th dose independent rect. 4 14
249 407.86 precipitation 0.1 43200 < th dose dependent rect. 12 8
250 407.86 precipitation 0.1 43200 < th dose dependent rect. 4 14
267 407.96 temperature 20.0 43200 > th dose independent rect. 19 11
273 407.98 temperature 20.0 43200 > th dose independent rect. 19 7
287 408.02 wind 1.0 43200 < th dose dependent rect. 3 3
323 408.17 wind 3.0 43200 > th dose dependent rect. 8 1
356 408.30 precipitation 0.1 43200 < th dose independent rect. 13 10
357 408.30 precipitation 0.1 43200 < th dose dependent rect. 13 10
358 408.31 precipitation 0.1 43200 > th dose independent rect. 13 10
375 408.36 precipitation 0.1 43200 < th dose independent rect. 13 13
376 408.36 precipitation 0.1 43200 < th dose dependent rect. 13 13
379 408.37 precipitation 0.1 43200 > th dose independent rect. 13 13
383 408.38 temperature 20.0 43200 > th dose independent sin 14 NA
393 408.40 precipitation 0.1 43200 > th dose independent sin 20 NA
399 408.41 precipitation 0.1 43200 < th dose independent sin 20 NA
402 408.41 precipitation 0.1 43200 < th dose dependent sin 20 NA
423 408.45 temperature 20.0 43200 < th dose independent rect. 19 10
450 408.51 precipitation 0.1 43200 > th dose independent sin 0 NA
456 408.52 precipitation 0.1 43200 < th dose independent sin 0 NA
458 408.52 precipitation 0.1 43200 < th dose dependent sin 0 NA
492 408.59 temperature 20.0 43200 < th dose independent rect. 21 4
512 408.63 precipitation 0.1 43200 > th dose dependent rect. 5 12
533 408.70 precipitation 0.1 43200 < th dose independent rect. 18 3
539 408.70 precipitation 0.1 43200 < th dose dependent rect. 18 3
608 408.83 temperature 25.0 43200 < th dose independent rect. 17 1
612 408.84 temperature 25.0 43200 > th dose independent rect. 17 1
704 409.05 temperature 20.0 43200 < th dose independent sin 13 NA
705 409.05 precipitation 0.1 43200 > th dose independent rect. 18 3
727 409.09 radiation 1.0 14400 < th dose dependent rect. 18 8
732 409.10 radiation 1.0 14400 < th dose dependent rect. 18 10
777 409.18 precipitation 0.1 43200 < th dose independent rect. 4 19
778 409.18 precipitation 0.1 43200 < th dose dependent rect. 4 19
823 409.26 precipitation 0.1 43200 > th dose independent rect. 4 19
828 409.27 wind 7.0 43200 < th dose dependent rect. 3 1
833 409.28 precipitation 0.1 43200 > th dose dependent rect. 8 9
836 409.29 temperature 20.0 43200 > th dose independent rect. 5 1
984 409.57 radiation 1.0 14400 < th dose dependent rect. 18 1
994 409.59 precipitation 0.1 43200 < th dose independent rect. 4 22
996 409.59 precipitation 0.1 43200 < th dose dependent rect. 4 22